The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses

Abstract The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire w...

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Bibliographic Details
Published in:Molecular biology and evolution 2021-08, Vol.38 (8), p.3478-3485
Main Authors: Webb, Andrew, Knoblauch, Jared, Sabankar, Nitesh, Kallur, Apeksha Sukesh, Hey, Jody, Sethuraman, Arun
Format: Article
Language:English
Subjects:
Computer software industry
Genomics
Population genetics
Public-private sector cooperation
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Summary:Abstract The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire workflows, including input preparation, file format conversion, various population genomic analyses, and output generation. The platform has also been developed with reproducibility and extensibility of analyses in mind. The PPP is an open-source package that is available for download and use at https://ppp.readthedocs.io/en/latest/PPP_pages/install.html.
ISSN:1537-1719
0737-4038
1537-1719
DOI:10.1093/molbev/msab113