Sphingobacterium pedocola sp. nov. a novel halotolerant bacterium isolated from agricultural soil

A Gram-reaction-negative halotolerant bacterial strain, designated Ka21 T , was isolated from agricultural soil and characterised using a polyphasic approach to determine its taxonomic position. On the basis of 16S rRNA gene sequence analysis, highest similarity was found with Sphingobacterium alkal...

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Published in:Antonie van Leeuwenhoek 2021-10, Vol.114 (10), p.1575-1584
Main Authors: Tóth, Ákos, Bata-Vidács, Ildikó, Kosztik, Judit, Máté, Rózsa, Kutasi, József, Tóth, Erika, Bóka, Károly, Táncsics, András, Nagy, István, Kovács, Gábor, Kukolya, József
Format: Article
Language:English
Subjects:
Agricultural land
Bacterial Typing Techniques
Biodegradation
Biomedical and Life Sciences
DNA, Bacterial - genetics
Fatty Acids - analysis
Genomes
Glycosidases
Glycoside hydrolase
Life Sciences
Medical Microbiology
Microbiology
New species
Original Paper
Phylogeny
Plant biomass
Plant Sciences
RNA, Ribosomal, 16S - genetics
rRNA 16S
Salinity tolerance
Sequence analysis
Sequence Analysis, DNA
Sodium chloride
Soil
Soil bacteria
Soil Microbiology
Soil microorganisms
Soil Science & Conservation
Soils
Sphingobacterium
Sphingobacterium - genetics
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creator Tóth, Ákos
Bata-Vidács, Ildikó
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Kutasi, József
Tóth, Erika
Bóka, Károly
Táncsics, András
Nagy, István
Kovács, Gábor
Kukolya, József
description A Gram-reaction-negative halotolerant bacterial strain, designated Ka21 T , was isolated from agricultural soil and characterised using a polyphasic approach to determine its taxonomic position. On the basis of 16S rRNA gene sequence analysis, highest similarity was found with Sphingobacterium alkalisoli Y3L14 T (96.72%). Cells were observed to be aerobic, non-motile rods. The isolate was found to be able to grow between 0 and 10% of NaCl concentration. The assembled genome of strain Ka21 T has a total length of 5.2 Mb with a G + C content of 41.0 mol%. According to the genome analysis, Ka21 T encodes several glycoside hydrolases that may play a role in the degradation of accumulated plant biomass in the soil. Based on phenotypic characteristics and phylogenetic analysis, it is concluded that strain Ka21 T represents a novel species in the Sphingobacterium genus for which the name Sphingobacterium pedocola sp. nov. is proposed. The type strain of the species is strain Ka21 T (= LMG 31575 T  = NCAIM B.02636 T ).
doi_str_mv 10.1007/s10482-021-01623-6
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subjects Agricultural land
Bacterial Typing Techniques
Biodegradation
Biomedical and Life Sciences
DNA, Bacterial - genetics
Fatty Acids - analysis
Genomes
Glycosidases
Glycoside hydrolase
Life Sciences
Medical Microbiology
Microbiology
New species
Original Paper
Phylogeny
Plant biomass
Plant Sciences
RNA, Ribosomal, 16S - genetics
rRNA 16S
Salinity tolerance
Sequence analysis
Sequence Analysis, DNA
Sodium chloride
Soil
Soil bacteria
Soil Microbiology
Soil microorganisms
Soil Science & Conservation
Soils
Sphingobacterium
Sphingobacterium - genetics
title Sphingobacterium pedocola sp. nov. a novel halotolerant bacterium isolated from agricultural soil
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