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Epidemiological and Molecular Characterization of Echinococcus granulosus Isolated from Small Ruminants in Kashmir Valley, India
Cystic Echinococcosis (CE) is an emergent or re-emergent zoonosis and remains a public health and economic problem all over the world. The present study was carried on the prevalence and genotypes of present in small ruminants in Kashmir valley. A total of 2100, sheep (2052) and goats (48), slaughte...
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Published in: | Iranian journal of parasitology 2021-07, Vol.16 (3), p.357-365 |
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container_title | Iranian journal of parasitology |
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creator | Beigh, Akeel Darzi, Mohmommad Bashir, Samina Dar, Parvaiz Ganai, Nazir Malik, Suhail Bhat, Basharat |
description | Cystic Echinococcosis (CE) is an emergent or re-emergent zoonosis and remains a public health and economic problem all over the world.
The present study was carried on the prevalence and genotypes of
present in small ruminants in Kashmir valley. A total of 2100, sheep (2052) and goats (48), slaughtered or spontaneously dead, from various areas of Kashmir valley were screened for the presence of hydatidosis. In case of goat none of the cases were found positive for hydatidosis, whereas, all the positive cases (85) were recorded in sheep only. The overall prevalence of hydatidosis was 4.04%. The prevalence was higher in female sheep (5.46%) compared to males (2.83%). Season-wise highest prevalence was in summer (4.55%), followed by autumn (4.1%), spring (3.89%) and winter (2.5%).The liver was observed to be the most frequently infected organ with relative prevalence of 61.17% followed by lungs (38.82%).The rDNA-ITS1 fragment of positive samples was amplified with BD1 / 4S primers.
The length of amplified fragment for all isolated samples was 1000bps. The products obtained on PCR were digested with four restriction enzymes (
and
1).
yielded identical fragments, 300 and 700 bp in sheep. TaqI restriction enzyme had no effect on PCR product and after digestion; intact 1000bps fragment was seen.
Phylogenetic analysis of ITS1 gene revealed that the common sheep strain (G1) is the predominant genotype in sheep in Kashmir valley. |
doi_str_mv | 10.18502/ijpa.v16i3.7088 |
format | article |
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The present study was carried on the prevalence and genotypes of
present in small ruminants in Kashmir valley. A total of 2100, sheep (2052) and goats (48), slaughtered or spontaneously dead, from various areas of Kashmir valley were screened for the presence of hydatidosis. In case of goat none of the cases were found positive for hydatidosis, whereas, all the positive cases (85) were recorded in sheep only. The overall prevalence of hydatidosis was 4.04%. The prevalence was higher in female sheep (5.46%) compared to males (2.83%). Season-wise highest prevalence was in summer (4.55%), followed by autumn (4.1%), spring (3.89%) and winter (2.5%).The liver was observed to be the most frequently infected organ with relative prevalence of 61.17% followed by lungs (38.82%).The rDNA-ITS1 fragment of positive samples was amplified with BD1 / 4S primers.
The length of amplified fragment for all isolated samples was 1000bps. The products obtained on PCR were digested with four restriction enzymes (
and
1).
yielded identical fragments, 300 and 700 bp in sheep. TaqI restriction enzyme had no effect on PCR product and after digestion; intact 1000bps fragment was seen.
Phylogenetic analysis of ITS1 gene revealed that the common sheep strain (G1) is the predominant genotype in sheep in Kashmir valley.</description><identifier>ISSN: 1735-7020</identifier><identifier>EISSN: 2008-238X</identifier><identifier>DOI: 10.18502/ijpa.v16i3.7088</identifier><identifier>PMID: 34630580</identifier><language>eng</language><publisher>Iran: Tehran University of Medical Sciences</publisher><subject>Original</subject><ispartof>Iranian journal of parasitology, 2021-07, Vol.16 (3), p.357-365</ispartof><rights>Copyright © 2021 Beigh et al. Published by Tehran University of Medical Sciences.</rights><rights>Copyright © 2021 Beigh et al. Published by Tehran University of Medical Sciences 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8476723/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8476723/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,37013,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34630580$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Beigh, Akeel</creatorcontrib><creatorcontrib>Darzi, Mohmommad</creatorcontrib><creatorcontrib>Bashir, Samina</creatorcontrib><creatorcontrib>Dar, Parvaiz</creatorcontrib><creatorcontrib>Ganai, Nazir</creatorcontrib><creatorcontrib>Malik, Suhail</creatorcontrib><creatorcontrib>Bhat, Basharat</creatorcontrib><title>Epidemiological and Molecular Characterization of Echinococcus granulosus Isolated from Small Ruminants in Kashmir Valley, India</title><title>Iranian journal of parasitology</title><addtitle>Iran J Parasitol</addtitle><description>Cystic Echinococcosis (CE) is an emergent or re-emergent zoonosis and remains a public health and economic problem all over the world.
The present study was carried on the prevalence and genotypes of
present in small ruminants in Kashmir valley. A total of 2100, sheep (2052) and goats (48), slaughtered or spontaneously dead, from various areas of Kashmir valley were screened for the presence of hydatidosis. In case of goat none of the cases were found positive for hydatidosis, whereas, all the positive cases (85) were recorded in sheep only. The overall prevalence of hydatidosis was 4.04%. The prevalence was higher in female sheep (5.46%) compared to males (2.83%). Season-wise highest prevalence was in summer (4.55%), followed by autumn (4.1%), spring (3.89%) and winter (2.5%).The liver was observed to be the most frequently infected organ with relative prevalence of 61.17% followed by lungs (38.82%).The rDNA-ITS1 fragment of positive samples was amplified with BD1 / 4S primers.
The length of amplified fragment for all isolated samples was 1000bps. The products obtained on PCR were digested with four restriction enzymes (
and
1).
yielded identical fragments, 300 and 700 bp in sheep. TaqI restriction enzyme had no effect on PCR product and after digestion; intact 1000bps fragment was seen.
Phylogenetic analysis of ITS1 gene revealed that the common sheep strain (G1) is the predominant genotype in sheep in Kashmir valley.</description><subject>Original</subject><issn>1735-7020</issn><issn>2008-238X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNpVkU2P1DAMhiMEYkfL3jmhHDnQwU3aJL0godEsjFiExJe4RW6SzmSVJkPSrrSc-Ol0P1iBD7Yl268tP4Q8r2FdqxbYa395xPVVLTxfS1DqEVkxAFUxrn48Jqta8raSwOCEnJVyCYtxpoQQT8kJbwSHVsGK_N4evXWjTyHtvcFAMVr6MQVn5oCZbg6Y0Uwu-184-RRpGujWHHxMJhkzF7rPGOeQypLuSgo4OUuHnEb6ZcQQ6Od59BHjVKiP9AOWw-gz_b5U3PUruovW4zPyZMBQ3Nl9PCXfzrdfN--ri0_vdpu3F5XhTTdVLfZcts5a1zSt6Uxr1SCV5WA56yRaYZ0CIRs-mNpa0bJugMX1XS_6HnvFT8mbO93j3I_OGhenjEEfsx8xX-uEXv9fif6g9-lKq0YKyfgi8PJeIKefsyuTHn0xLgSMLs1Fs-WfXcOhhqUV7lpNTqVkNzysqUHfstM37PQtO33Dbhl58e95DwN_SfE_gH-aqA</recordid><startdate>20210701</startdate><enddate>20210701</enddate><creator>Beigh, Akeel</creator><creator>Darzi, Mohmommad</creator><creator>Bashir, Samina</creator><creator>Dar, Parvaiz</creator><creator>Ganai, Nazir</creator><creator>Malik, Suhail</creator><creator>Bhat, Basharat</creator><general>Tehran University of Medical Sciences</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20210701</creationdate><title>Epidemiological and Molecular Characterization of Echinococcus granulosus Isolated from Small Ruminants in Kashmir Valley, India</title><author>Beigh, Akeel ; Darzi, Mohmommad ; Bashir, Samina ; Dar, Parvaiz ; Ganai, Nazir ; Malik, Suhail ; Bhat, Basharat</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c349t-5ab375edde445c9c5d8f78d30d3297ad6de806743fc1dd6529f0529b9b6bbab83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Original</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Beigh, Akeel</creatorcontrib><creatorcontrib>Darzi, Mohmommad</creatorcontrib><creatorcontrib>Bashir, Samina</creatorcontrib><creatorcontrib>Dar, Parvaiz</creatorcontrib><creatorcontrib>Ganai, Nazir</creatorcontrib><creatorcontrib>Malik, Suhail</creatorcontrib><creatorcontrib>Bhat, Basharat</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Iranian journal of parasitology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Beigh, Akeel</au><au>Darzi, Mohmommad</au><au>Bashir, Samina</au><au>Dar, Parvaiz</au><au>Ganai, Nazir</au><au>Malik, Suhail</au><au>Bhat, Basharat</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Epidemiological and Molecular Characterization of Echinococcus granulosus Isolated from Small Ruminants in Kashmir Valley, India</atitle><jtitle>Iranian journal of parasitology</jtitle><addtitle>Iran J Parasitol</addtitle><date>2021-07-01</date><risdate>2021</risdate><volume>16</volume><issue>3</issue><spage>357</spage><epage>365</epage><pages>357-365</pages><issn>1735-7020</issn><eissn>2008-238X</eissn><abstract>Cystic Echinococcosis (CE) is an emergent or re-emergent zoonosis and remains a public health and economic problem all over the world.
The present study was carried on the prevalence and genotypes of
present in small ruminants in Kashmir valley. A total of 2100, sheep (2052) and goats (48), slaughtered or spontaneously dead, from various areas of Kashmir valley were screened for the presence of hydatidosis. In case of goat none of the cases were found positive for hydatidosis, whereas, all the positive cases (85) were recorded in sheep only. The overall prevalence of hydatidosis was 4.04%. The prevalence was higher in female sheep (5.46%) compared to males (2.83%). Season-wise highest prevalence was in summer (4.55%), followed by autumn (4.1%), spring (3.89%) and winter (2.5%).The liver was observed to be the most frequently infected organ with relative prevalence of 61.17% followed by lungs (38.82%).The rDNA-ITS1 fragment of positive samples was amplified with BD1 / 4S primers.
The length of amplified fragment for all isolated samples was 1000bps. The products obtained on PCR were digested with four restriction enzymes (
and
1).
yielded identical fragments, 300 and 700 bp in sheep. TaqI restriction enzyme had no effect on PCR product and after digestion; intact 1000bps fragment was seen.
Phylogenetic analysis of ITS1 gene revealed that the common sheep strain (G1) is the predominant genotype in sheep in Kashmir valley.</abstract><cop>Iran</cop><pub>Tehran University of Medical Sciences</pub><pmid>34630580</pmid><doi>10.18502/ijpa.v16i3.7088</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Original |
title | Epidemiological and Molecular Characterization of Echinococcus granulosus Isolated from Small Ruminants in Kashmir Valley, India |
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