Loading…

Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study

Rapid diagnosis of the Covid-19 disease is the best way to prevent infection. In this paper, it is proposed to use machine learning methods to aid diagnoses quickly Covid-19 and focused on effect of several features on classification accuracy. In the proposed method 746 axial computed tomography (CT...

Full description

Saved in:
Bibliographic Details
Published in:Biomedical signal processing and control 2022-07, Vol.76, p.103662-103662, Article 103662
Main Authors: Al-Areqi, Farid, Konyar, Mehmet Zeki
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493
cites cdi_FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493
container_end_page 103662
container_issue
container_start_page 103662
container_title Biomedical signal processing and control
container_volume 76
creator Al-Areqi, Farid
Konyar, Mehmet Zeki
description Rapid diagnosis of the Covid-19 disease is the best way to prevent infection. In this paper, it is proposed to use machine learning methods to aid diagnoses quickly Covid-19 and focused on effect of several features on classification accuracy. In the proposed method 746 axial computed tomography (CT) images of the lung; 349 Covid-19 (positives) and 397 non-Covid-19 (negative) are used. Gray-level texture, shape and first order statistical features were extracted from the images. The feature vector for model training is constructed with one feature group or combination of more than one group. We then classified with Support Vector Machine, Random Forest, k-nearest neighbor and XGBoost classifier models. The hyperparameter of the models were controlled by the tuning test. Experimental results obtained with 10-fold cross-validation. The results of cross-validation verified with the additionally independent test. The best overall accuracy was 98.65% with first order statistics features classified with XGBoost. In the gray level features, the best individual results given by GLSZM as 81.25%, and the best combination result is with GLDM, GLRLM and GLSZM features as 85.52%. An important finding of this paper is that, for Covid-19 classification, the shape and first order statistics features are more valuable than gray level features. The proposed results compared with the literature studies under some Covid-19 dataset for accuracy, precision, sensitivity and F1-score metrics. Also, the literature studies which used the different Covid-19 dataset were compared with the proposed study. Our results have the significant superiority when compared with the literature studies.
doi_str_mv 10.1016/j.bspc.2022.103662
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8947946</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1746809422001847</els_id><sourcerecordid>2645471984</sourcerecordid><originalsourceid>FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493</originalsourceid><addsrcrecordid>eNp9kc1u1DAUhSMEoqXwAiyQl2wyXCdOYiOEVFXlR6rEBtaWY19PPEriwXYi5oF4TzxMOwIWrPxzzj2-vl9RvKSwoUDbN7tNH_d6U0FV5Yu6batHxSXtWFtyCvzxwx4EuyiexbgDYLyj7GlxUTd1A41oLouft9aiTm7FGWMkuKpxUcn5mXhLjMtiwDkRiyotAQn-SEHp3_qEafAmEusD0aOK0Vmnz6Xar86UVBAb_JRP035JaEjyk98GtR8OxE1qi_EtuSaD2w5Eab3k6MO_WTEt5vC8eGLVGPHF_XpVfPtw-_XmU3n35ePnm-u7Ute8SSUF6Cg0iExQMAaoAuRN0_VgNANLtRE97ykTVVdzaqDlSgPNU6r6irdM1FfF-1PufuknNDp_PahR7kNuNhykV07-rcxukFu_Si5YJ1ibA17fBwT_fcGY5OSixnFUM_olyqplDeuo4Cxbq5NVBx9jQHt-hoI88pU7eeQrj3zliW8uevVng-eSB6DZ8O5kwDym1WGQUTucNRoXMmdpvPtf_i8OibtV</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2645471984</pqid></control><display><type>article</type><title>Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study</title><source>ScienceDirect Journals</source><creator>Al-Areqi, Farid ; Konyar, Mehmet Zeki</creator><creatorcontrib>Al-Areqi, Farid ; Konyar, Mehmet Zeki</creatorcontrib><description>Rapid diagnosis of the Covid-19 disease is the best way to prevent infection. In this paper, it is proposed to use machine learning methods to aid diagnoses quickly Covid-19 and focused on effect of several features on classification accuracy. In the proposed method 746 axial computed tomography (CT) images of the lung; 349 Covid-19 (positives) and 397 non-Covid-19 (negative) are used. Gray-level texture, shape and first order statistical features were extracted from the images. The feature vector for model training is constructed with one feature group or combination of more than one group. We then classified with Support Vector Machine, Random Forest, k-nearest neighbor and XGBoost classifier models. The hyperparameter of the models were controlled by the tuning test. Experimental results obtained with 10-fold cross-validation. The results of cross-validation verified with the additionally independent test. The best overall accuracy was 98.65% with first order statistics features classified with XGBoost. In the gray level features, the best individual results given by GLSZM as 81.25%, and the best combination result is with GLDM, GLRLM and GLSZM features as 85.52%. An important finding of this paper is that, for Covid-19 classification, the shape and first order statistics features are more valuable than gray level features. The proposed results compared with the literature studies under some Covid-19 dataset for accuracy, precision, sensitivity and F1-score metrics. Also, the literature studies which used the different Covid-19 dataset were compared with the proposed study. Our results have the significant superiority when compared with the literature studies.</description><identifier>ISSN: 1746-8094</identifier><identifier>EISSN: 1746-8108</identifier><identifier>EISSN: 1746-8094</identifier><identifier>DOI: 10.1016/j.bspc.2022.103662</identifier><identifier>PMID: 35350595</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Covid-19 ; CT images ; Diagnosis ; Features ; Machine learning</subject><ispartof>Biomedical signal processing and control, 2022-07, Vol.76, p.103662-103662, Article 103662</ispartof><rights>2022 Elsevier Ltd</rights><rights>2022 Elsevier Ltd. All rights reserved.</rights><rights>2022 Elsevier Ltd. All rights reserved. 2022 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493</citedby><cites>FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35350595$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Al-Areqi, Farid</creatorcontrib><creatorcontrib>Konyar, Mehmet Zeki</creatorcontrib><title>Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study</title><title>Biomedical signal processing and control</title><addtitle>Biomed Signal Process Control</addtitle><description>Rapid diagnosis of the Covid-19 disease is the best way to prevent infection. In this paper, it is proposed to use machine learning methods to aid diagnoses quickly Covid-19 and focused on effect of several features on classification accuracy. In the proposed method 746 axial computed tomography (CT) images of the lung; 349 Covid-19 (positives) and 397 non-Covid-19 (negative) are used. Gray-level texture, shape and first order statistical features were extracted from the images. The feature vector for model training is constructed with one feature group or combination of more than one group. We then classified with Support Vector Machine, Random Forest, k-nearest neighbor and XGBoost classifier models. The hyperparameter of the models were controlled by the tuning test. Experimental results obtained with 10-fold cross-validation. The results of cross-validation verified with the additionally independent test. The best overall accuracy was 98.65% with first order statistics features classified with XGBoost. In the gray level features, the best individual results given by GLSZM as 81.25%, and the best combination result is with GLDM, GLRLM and GLSZM features as 85.52%. An important finding of this paper is that, for Covid-19 classification, the shape and first order statistics features are more valuable than gray level features. The proposed results compared with the literature studies under some Covid-19 dataset for accuracy, precision, sensitivity and F1-score metrics. Also, the literature studies which used the different Covid-19 dataset were compared with the proposed study. Our results have the significant superiority when compared with the literature studies.</description><subject>Covid-19</subject><subject>CT images</subject><subject>Diagnosis</subject><subject>Features</subject><subject>Machine learning</subject><issn>1746-8094</issn><issn>1746-8108</issn><issn>1746-8094</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp9kc1u1DAUhSMEoqXwAiyQl2wyXCdOYiOEVFXlR6rEBtaWY19PPEriwXYi5oF4TzxMOwIWrPxzzj2-vl9RvKSwoUDbN7tNH_d6U0FV5Yu6batHxSXtWFtyCvzxwx4EuyiexbgDYLyj7GlxUTd1A41oLouft9aiTm7FGWMkuKpxUcn5mXhLjMtiwDkRiyotAQn-SEHp3_qEafAmEusD0aOK0Vmnz6Xar86UVBAb_JRP035JaEjyk98GtR8OxE1qi_EtuSaD2w5Eab3k6MO_WTEt5vC8eGLVGPHF_XpVfPtw-_XmU3n35ePnm-u7Ute8SSUF6Cg0iExQMAaoAuRN0_VgNANLtRE97ykTVVdzaqDlSgPNU6r6irdM1FfF-1PufuknNDp_PahR7kNuNhykV07-rcxukFu_Si5YJ1ibA17fBwT_fcGY5OSixnFUM_olyqplDeuo4Cxbq5NVBx9jQHt-hoI88pU7eeQrj3zliW8uevVng-eSB6DZ8O5kwDym1WGQUTucNRoXMmdpvPtf_i8OibtV</recordid><startdate>20220701</startdate><enddate>20220701</enddate><creator>Al-Areqi, Farid</creator><creator>Konyar, Mehmet Zeki</creator><general>Elsevier Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220701</creationdate><title>Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study</title><author>Al-Areqi, Farid ; Konyar, Mehmet Zeki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Covid-19</topic><topic>CT images</topic><topic>Diagnosis</topic><topic>Features</topic><topic>Machine learning</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Al-Areqi, Farid</creatorcontrib><creatorcontrib>Konyar, Mehmet Zeki</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biomedical signal processing and control</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Al-Areqi, Farid</au><au>Konyar, Mehmet Zeki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study</atitle><jtitle>Biomedical signal processing and control</jtitle><addtitle>Biomed Signal Process Control</addtitle><date>2022-07-01</date><risdate>2022</risdate><volume>76</volume><spage>103662</spage><epage>103662</epage><pages>103662-103662</pages><artnum>103662</artnum><issn>1746-8094</issn><eissn>1746-8108</eissn><eissn>1746-8094</eissn><abstract>Rapid diagnosis of the Covid-19 disease is the best way to prevent infection. In this paper, it is proposed to use machine learning methods to aid diagnoses quickly Covid-19 and focused on effect of several features on classification accuracy. In the proposed method 746 axial computed tomography (CT) images of the lung; 349 Covid-19 (positives) and 397 non-Covid-19 (negative) are used. Gray-level texture, shape and first order statistical features were extracted from the images. The feature vector for model training is constructed with one feature group or combination of more than one group. We then classified with Support Vector Machine, Random Forest, k-nearest neighbor and XGBoost classifier models. The hyperparameter of the models were controlled by the tuning test. Experimental results obtained with 10-fold cross-validation. The results of cross-validation verified with the additionally independent test. The best overall accuracy was 98.65% with first order statistics features classified with XGBoost. In the gray level features, the best individual results given by GLSZM as 81.25%, and the best combination result is with GLDM, GLRLM and GLSZM features as 85.52%. An important finding of this paper is that, for Covid-19 classification, the shape and first order statistics features are more valuable than gray level features. The proposed results compared with the literature studies under some Covid-19 dataset for accuracy, precision, sensitivity and F1-score metrics. Also, the literature studies which used the different Covid-19 dataset were compared with the proposed study. Our results have the significant superiority when compared with the literature studies.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>35350595</pmid><doi>10.1016/j.bspc.2022.103662</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1746-8094
ispartof Biomedical signal processing and control, 2022-07, Vol.76, p.103662-103662, Article 103662
issn 1746-8094
1746-8108
1746-8094
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8947946
source ScienceDirect Journals
subjects Covid-19
CT images
Diagnosis
Features
Machine learning
title Effectiveness evaluation of different feature extraction methods for classification of covid-19 from computed tomography images: A high accuracy classification study
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-27T18%3A10%3A51IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Effectiveness%20evaluation%20of%20different%20feature%20extraction%20methods%20for%20classification%20of%20covid-19%20from%20computed%20tomography%20images:%20A%20high%20accuracy%20classification%20study&rft.jtitle=Biomedical%20signal%20processing%20and%20control&rft.au=Al-Areqi,%20Farid&rft.date=2022-07-01&rft.volume=76&rft.spage=103662&rft.epage=103662&rft.pages=103662-103662&rft.artnum=103662&rft.issn=1746-8094&rft.eissn=1746-8108&rft_id=info:doi/10.1016/j.bspc.2022.103662&rft_dat=%3Cproquest_pubme%3E2645471984%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c385t-1007105ee4910dd01a0e8557b0dc40f1cd9b8b14927381d068ac011742b286493%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2645471984&rft_id=info:pmid/35350595&rfr_iscdi=true