Structural and Functional Annotation and Molecular Docking Analysis of a Hypothetical Protein from Neisseria gonorrhoeae: An In-Silico Approach

• Published in: BioMed research international 2022-09, Vol.2022, p.4302625-12
• Main Authors: Mazumder, Lincon, Hasan, Md. Rakibul, Fatema, Kanij, Islam, Md. Zahirul, Tamanna, Sanjida Khanam
• Format: Article
• Language: English
• Subjects: Amino acids; Annotations; Antigens; Bacterial proteins; Bioinformatics; Causes of; Cell cycle; Cell division; Chromosomes; Epitopes; Epitopes, T-Lymphocyte; Genomes; Gonorrhea; Gonorrhea - drug therapy; Histocompatibility antigen HLA; Humans; Identification and classification; Immunity, Humoral; Infections; Leukocytes; Localization; Lymphocytes; Lymphocytes T; Methods; Molecular docking; Molecular Docking Simulation; Neisseria gonorrhoeae; Neisseria gonorrhoeae - genetics; Pathogenicity; Pathogens; Phylogenetics; Physicochemical properties; Physiological aspects; Protein structure; Protein structure prediction; Proteins; Public health; Secondary structure; Sexually transmitted diseases; STD; Structure; Structure-function relationships; Therapeutic targets; Thermal stability; Vaccines
• ISSN: 2314-6133; 2314-6141; 2314-6141
• DOI: 10.1155/2022/4302625

Background. Worldwide, Neisseria gonorrhoeae-related sexually transmitted infections (STIs) continue to be of significant public health concern. This obligate-human pathogen has developed a number of defenses against both innate and adaptive immune responses during infection, some of which are mediated by the pathogen’s proteins. Hence, the uncharacterized proteins of N. gonorrhoeae can be annotated to get insight into the unique functions of this organism related to its pathogenicity and to find a more efficient therapeutic target. Methods. In this study, a hypothetical protein (HP) of N. gonorrhoeae was chosen for analysis and an in-silico approach was used to explore various properties such as physicochemical characteristics, subcellular localization, secondary structure, 3D structures, and functional annotation of that HP. Finally, a molecular docking analysis was performed to design an epitope-based vaccine against that HP. Results. This study has identified the potential role of the chosen HP of N. gonorrhoeae in plasmid transfer, cell cycle control, cell division, and chromosome partitioning. Acidic nature, thermal stability, cytoplasmic localization of the protein, and some of its other physicochemical properties have also been identified through this study. Molecular docking analysis has demonstrated that one of the T cell epitopes of the protein has a significant binding affinity with the human leukocyte antigen HLA-B∗15 : 01. Conclusions. The in-silico characterization of this protein will help us understand molecular mechanism of action of N. gonorrhoeae and get an insight into novel therapeutic identification processes. This research will, therefore, enhance our knowledge to find new medications to tackle this potential threat to humankind.