Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype

We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza‐like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (...

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Bibliographic Details
Published in:Influenza and other respiratory viruses 2023-01, Vol.17 (1), p.e13057-n/a
Main Authors: Faleye, Temitope O. C., Elyaderani, Amir, Skidmore, Peter, Adhikari, Sangeet, Smith, Abriana, Kaiser, Nicole, Sandrolini, Helen, Finnerty, Sarah, Halden, Rolf U., Varsani, Arvind, Scotch, Matthew
Format: Article
Language:English
Subjects:
Capsid protein
Enterovirus Infections
Genotype
Genotype & phenotype
Genotypes
high‐throughput nucleotide sequencing
Humans
Influenza
Nucleotide sequence
Phylogenetics
Picornaviridae Infections - epidemiology
population surveillance
Respiratory diseases
Respiratory Tract Infections - epidemiology
Rhinovirus
Rhinovirus - genetics
Short Communication
Short Communications
Southwestern United States
student health services
Universities
Virus Diseases
Viruses
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Summary:We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza‐like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (A11, A22, A23, A25, A67, A101, B6, B79, C1, C17, C36, and C56, as well a new genotype [AZ88**]) and 16 variants that contributed to the burden of ILI in the community. We also describe the complete capsid protein gene of a member (AZ88**) of an unassigned rhinovirus A genotype.
ISSN:1750-2640
1750-2659
DOI:10.1111/irv.13057