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Genome-Wide Identification and Characterization of the GRF Gene Family in Melastoma dodecandrum
Growth-regulating factor (GRF) is a kind of transcription factor unique to plants, playing an important role in the flowering regulation, growth, and development of plants. is an important member of Melastomataceae, with ornamental, medicinal, and edible benefits. The identification of the GRF gene...
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| Published in: | International journal of molecular sciences 2023-01, Vol.24 (2), p.1261 |
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| Main Authors: | , , , , , , , , |
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| cites | cdi_FETCH-LOGICAL-c412t-c891c04deb2f7f9e48fac36bec0671138902f527119c8f299228244dee99efc53 |
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| container_issue | 2 |
| container_start_page | 1261 |
| container_title | International journal of molecular sciences |
| container_volume | 24 |
| creator | Huang, Jie Chen, Gui-Zhen Ahmad, Sagheer Hao, Yang Chen, Jin-Liao Zhou, Yu-Zhen Lan, Si-Ren Liu, Zhong-Jian Peng, Dong-Hui |
| description | Growth-regulating factor (GRF) is a kind of transcription factor unique to plants, playing an important role in the flowering regulation, growth, and development of plants.
is an important member of Melastomataceae, with ornamental, medicinal, and edible benefits. The identification of the GRF gene family in
can help to improve their character of flavor and continuous flowering. The members of the GRF gene family were identified from the
genome, and their bioinformatics, selective pressure, and expression patterns were analyzed. The results showed that there were 20 GRF genes in
. Phylogenetic analysis showed that the 71 GRF genes from
,
,
, and
can be divided into three clades and six subclades. The 20 GRF genes of
were distributed in twelve chromosomes and one contig. Furthermore, the gene structure and motif analysis showed that the intron and motif within each clade were very similar, but there were great differences among different clades. The promoter contained cis-acting elements related to hormone induction, stress, and growth and development. Different transcriptomic expression of MdGRFs indicated that MdGRFs may be involved in regulating the growth and development of
. The results laid a foundation for further study on the function and molecular mechanism of the
GRF gene family. |
| doi_str_mv | 10.3390/ijms24021261 |
| format | article |
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is an important member of Melastomataceae, with ornamental, medicinal, and edible benefits. The identification of the GRF gene family in
can help to improve their character of flavor and continuous flowering. The members of the GRF gene family were identified from the
genome, and their bioinformatics, selective pressure, and expression patterns were analyzed. The results showed that there were 20 GRF genes in
. Phylogenetic analysis showed that the 71 GRF genes from
,
,
, and
can be divided into three clades and six subclades. The 20 GRF genes of
were distributed in twelve chromosomes and one contig. Furthermore, the gene structure and motif analysis showed that the intron and motif within each clade were very similar, but there were great differences among different clades. The promoter contained cis-acting elements related to hormone induction, stress, and growth and development. Different transcriptomic expression of MdGRFs indicated that MdGRFs may be involved in regulating the growth and development of
. The results laid a foundation for further study on the function and molecular mechanism of the
GRF gene family.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms24021261</identifier><identifier>PMID: 36674776</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Bioinformatics ; Cell cycle ; Chromosomes ; Flowering ; Flowers & plants ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genes ; Genomes ; Melastoma ; Melastomataceae - chemistry ; Multigene Family ; Ornamental plants ; Phylogeny ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plants (botany) ; Proteins ; Signal transduction ; Transcription factors ; Transcriptomics</subject><ispartof>International journal of molecular sciences, 2023-01, Vol.24 (2), p.1261</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-c891c04deb2f7f9e48fac36bec0671138902f527119c8f299228244dee99efc53</citedby><cites>FETCH-LOGICAL-c412t-c891c04deb2f7f9e48fac36bec0671138902f527119c8f299228244dee99efc53</cites><orcidid>0000-0003-2218-8350 ; 0000-0002-8970-2337 ; 0000-0002-5801-1015</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2767227806/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2767227806?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,25734,27905,27906,36993,36994,44571,53772,53774,74875</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36674776$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huang, Jie</creatorcontrib><creatorcontrib>Chen, Gui-Zhen</creatorcontrib><creatorcontrib>Ahmad, Sagheer</creatorcontrib><creatorcontrib>Hao, Yang</creatorcontrib><creatorcontrib>Chen, Jin-Liao</creatorcontrib><creatorcontrib>Zhou, Yu-Zhen</creatorcontrib><creatorcontrib>Lan, Si-Ren</creatorcontrib><creatorcontrib>Liu, Zhong-Jian</creatorcontrib><creatorcontrib>Peng, Dong-Hui</creatorcontrib><title>Genome-Wide Identification and Characterization of the GRF Gene Family in Melastoma dodecandrum</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>Growth-regulating factor (GRF) is a kind of transcription factor unique to plants, playing an important role in the flowering regulation, growth, and development of plants.
is an important member of Melastomataceae, with ornamental, medicinal, and edible benefits. The identification of the GRF gene family in
can help to improve their character of flavor and continuous flowering. The members of the GRF gene family were identified from the
genome, and their bioinformatics, selective pressure, and expression patterns were analyzed. The results showed that there were 20 GRF genes in
. Phylogenetic analysis showed that the 71 GRF genes from
,
,
, and
can be divided into three clades and six subclades. The 20 GRF genes of
were distributed in twelve chromosomes and one contig. Furthermore, the gene structure and motif analysis showed that the intron and motif within each clade were very similar, but there were great differences among different clades. The promoter contained cis-acting elements related to hormone induction, stress, and growth and development. Different transcriptomic expression of MdGRFs indicated that MdGRFs may be involved in regulating the growth and development of
. The results laid a foundation for further study on the function and molecular mechanism of the
GRF gene family.</description><subject>Bioinformatics</subject><subject>Cell cycle</subject><subject>Chromosomes</subject><subject>Flowering</subject><subject>Flowers & plants</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genomes</subject><subject>Melastoma</subject><subject>Melastomataceae - chemistry</subject><subject>Multigene Family</subject><subject>Ornamental plants</subject><subject>Phylogeny</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plants (botany)</subject><subject>Proteins</subject><subject>Signal transduction</subject><subject>Transcription factors</subject><subject>Transcriptomics</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkc1rGzEQxUVJqPPRW89BkEsO3VQarbWrS6GY2A0kBEpCjkLWjmKZ3VUq7RaSv74yToyb0wwzv3nM4xHylbNLIRT77tddgpIBB8k_kSNeAhSMyepgr5-Q45TWjIGAqfpMJkLKqqwqeUT0AvvQYfHoG6TXDfaDd96awYeemr6hs5WJxg4Y_et2GBwdVkgXv-c0nyKdm863L9T39BZbk4bQGdqEBm2-jmN3Sg6daRN-easn5GF-dT_7VdzcLa5nP28KW3IYClsrblnZ4BJc5RSWtTNWyCXa_D3nolYM3BRyq2ztQCmAGsrMo1Lo7FSckB9b3edx2WFjs5FoWv0cfWfiiw7G6_83vV_pp_BXq1qKGkQWuHgTiOHPiGnQnU8W29b0GMakoZIZ44LLjJ5_QNdhjH22t6EqgKpmG-rblrIxpBTR7Z7hTG-S0_vJZfxs38AOfo9K_AMf5JS_</recordid><startdate>20230109</startdate><enddate>20230109</enddate><creator>Huang, Jie</creator><creator>Chen, Gui-Zhen</creator><creator>Ahmad, Sagheer</creator><creator>Hao, Yang</creator><creator>Chen, Jin-Liao</creator><creator>Zhou, Yu-Zhen</creator><creator>Lan, Si-Ren</creator><creator>Liu, Zhong-Jian</creator><creator>Peng, Dong-Hui</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2218-8350</orcidid><orcidid>https://orcid.org/0000-0002-8970-2337</orcidid><orcidid>https://orcid.org/0000-0002-5801-1015</orcidid></search><sort><creationdate>20230109</creationdate><title>Genome-Wide Identification and Characterization of the GRF Gene Family in Melastoma dodecandrum</title><author>Huang, Jie ; 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is an important member of Melastomataceae, with ornamental, medicinal, and edible benefits. The identification of the GRF gene family in
can help to improve their character of flavor and continuous flowering. The members of the GRF gene family were identified from the
genome, and their bioinformatics, selective pressure, and expression patterns were analyzed. The results showed that there were 20 GRF genes in
. Phylogenetic analysis showed that the 71 GRF genes from
,
,
, and
can be divided into three clades and six subclades. The 20 GRF genes of
were distributed in twelve chromosomes and one contig. Furthermore, the gene structure and motif analysis showed that the intron and motif within each clade were very similar, but there were great differences among different clades. The promoter contained cis-acting elements related to hormone induction, stress, and growth and development. Different transcriptomic expression of MdGRFs indicated that MdGRFs may be involved in regulating the growth and development of
. The results laid a foundation for further study on the function and molecular mechanism of the
GRF gene family.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36674776</pmid><doi>10.3390/ijms24021261</doi><orcidid>https://orcid.org/0000-0003-2218-8350</orcidid><orcidid>https://orcid.org/0000-0002-8970-2337</orcidid><orcidid>https://orcid.org/0000-0002-5801-1015</orcidid><oa>free_for_read</oa></addata></record> |
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| source | Open Access: PubMed Central; Publicly Available Content (ProQuest) |
| subjects | Bioinformatics Cell cycle Chromosomes Flowering Flowers & plants Gene Expression Profiling Gene Expression Regulation, Plant Genes Genomes Melastoma Melastomataceae - chemistry Multigene Family Ornamental plants Phylogeny Plant Proteins - genetics Plant Proteins - metabolism Plants (botany) Proteins Signal transduction Transcription factors Transcriptomics |
| title | Genome-Wide Identification and Characterization of the GRF Gene Family in Melastoma dodecandrum |
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