A Functional Polymorphism Downstream of Vitamin A Regulator Gene CYP26B1 Is Associated with Hand Osteoarthritis

• Published in: International journal of molecular sciences 2023-02, Vol.24 (3), p.3021
• Main Authors: Khosasih, Vivia, Liu, Kai-Ming, Huang, Chung-Ming, Liou, Lieh-Bang, Hsieh, Ming-Shium, Lee, Chian-Her, Tsai, Chang-Youh, Kuo, San-Yuan, Hwa, Su-Yang, Yu, Chia-Li, Chang, Chih-Hao, Lin, Cheng-Jyh, Hsieh, Song-Chou, Cheng, Chun-Ying, Chen, Wei-Ming, Chen, Liang-Kuang, Chuang, Hui-Ping, Chen, Ying-Ting, Tsai, Pei-Chun, Lu, Liang-Suei, H'ng, Weng-Siong, Zhang, Yanfei, Chen, Hsiang-Cheng, Chen, Chien-Hsiun, Lee, Ming Ta Michael, Wu, Jer-Yuarn
• Format: Article
• Language: English
• Subjects: Alleles; Annotations; Arthritis; Case-Control Studies; China; Chromosomes; Deoxyribonuclease; Females; Genes; Genes, Regulator; Genetic analysis; Genetic diversity; Genetic Predisposition to Disease; Genome-wide association studies; Genome-Wide Association Study; Genomes; Genotype; Genotyping; Haplotypes; Health risk assessment; Humans; Linkage disequilibrium; Nucleotides; Osteoarthritis; Osteoarthritis - genetics; Polymorphism; Polymorphism, Single Nucleotide; Population genetics; Retinoic acid; Retinoic Acid 4-Hydroxylase - genetics; Signal transduction; Single-nucleotide polymorphism; Vitamin A; White people
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms24033021

While genetic analyses have revealed ~100 risk loci associated with osteoarthritis (OA), only eight have been linked to hand OA. Besides, these studies were performed in predominantly European and Caucasian ancestries. Here, we conducted a genome-wide association study in the Han Chinese population to identify genetic variations associated with the disease. We recruited a total of 1136 individuals (n = 420 hand OA-affected; n = 716 unaffected control subjects) of Han Chinese ancestry. We carried out genotyping using Axiom Asia Precisi on Medicine Research Array, and we employed the RegulomeDB database and RoadMap DNase I Hypersensitivity Sites annotations to further narrow down our potential candidate variants. Genetic variants identified were tested in the Geisinger's hand OA cohort selected from the Geisinger MyCode community health initiative (MyCode ). We also performed a luciferase reporter assay to confirm the potential impact of top candidate single-nucleotide polymorphisms (SNPs) on hand OA. We identified six associated SNPs ( -value = 6.76 × 10 -7.31 × 10 ) clustered at 2p13.2 downstream of the gene. The strongest association signal identified was rs883313 ( -value = 6.76 × 10 , odds ratio (OR) = 1.76), followed by rs12713768 ( -value = 1.36 × 10 , OR = 1.74), near or within the enhancer region closest to the gene. Our findings showed that the major risk-conferring CC haplotype of SNPs rs12713768 and rs10208040 [strong linkage disequilibrium (LD); D' = 1, r = 0.651] drives 18.9% of enhancer expression activity. Our findings highlight that the SNP rs12713768 is associated with susceptibility to and severity of hand OA in the Han Chinese population and that the suggested retinoic acid signaling pathway may play an important role in its pathogenesis.