A Library of Promoter- gfp Fusion Reporters for Studying Systematic Expression Pattern of Cyclic-di-GMP Metabolism-Related Genes in Pseudomonas aeruginosa

• Published in: Applied and environmental microbiology 2023-02, Vol.89 (2), p.e0189122-e0189122
• Main Authors: Liu, Dejian, Wang, Di, Wei, Qing, Zhang, Yu, Yu, Haiying, Ma, Luyan Z
• Format: Article
• Language: English
• Subjects: Antibiotics; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; Bacteriology; Biofilms; Biosynthesis; Cyclic GMP - metabolism; E coli; Escherichia coli; Escherichia coli - genetics; Escherichia coli - metabolism; Gene expression; Gene Expression Regulation, Bacterial; Gene regulation; Genes; Genetics and Molecular Biology; Growth conditions; Growth media; Humans; Libraries; Metabolism; Opportunist infection; Plasmids; Promoter Regions, Genetic; Promoters; Pseudomonas aeruginosa; Pseudomonas aeruginosa - physiology; Reporters; Transcription
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/aem.01891-22

The opportunistic pathogen Pseudomonas aeruginosa is an environmental microorganism and is a model organism for biofilm research. Cyclic dimeric GMP (c-di-GMP) is a bacterial second messenger that plays critical roles in biofilm formation. P. aeruginosa contains approximately 40 genes that encode enzymes that participate in the metabolism of c-di-GMP (biosynthesis or degradation), yet it lacks tools that aid investigation of the systematic expression pattern of those genes. In this study, we constructed a promoter- fusion reporter library that consists of 41 reporter plasmids. Each plasmid contains a promoter of corresponding -di-GMP etabolism- elated (CMR) genes from P. aeruginosa reference strain PAO1; thus, each promoter- fusion reporter can be used to detect the promoter activity as well as the transcription of corresponding gene. The promoter activity was tested in P. aeruginosa and Escherichia coli. Among the 41 genes, the promoters of 26 genes showed activity in both P. aeruginosa and E. coli. The library was applied to determine the influence of different temperatures, growth media, and subinhibitory concentrations of antibiotics on the transcriptional profile of the 41 CMR genes in P. aeruginosa. The results showed that different growth conditions did affect the transcription of different genes, while the promoter activity of a few genes was kept at the same level under several different growth conditions. In summary, we provide a promoter- fusion reporter library for systematic monitoring or study of the regulation of CMR genes in P. aeruginosa. In addition, the functional promoters can also be used as a biobrick for synthetic biology studies. The opportunistic pathogen P. aeruginosa can cause acute and chronic infections in humans, and it is one of the main pathogens in nosocomial infections. Biofilm formation is one of the most important causes for P. aeruginosa persistence in hosts and evasion of immune and antibiotic attacks. c-di-GMP is a critical second messenger to control biofilm formation. In P. aeruginosa reference strain PAO1, 41 genes are predicted to participate in the making and breaking of this dinucleotide. A major missing piece of information in this field is the systematic expression profile of those genes in response to changing environment. Toward this goal, we constructed a promoter- transcriptional fusion reporter library that consists of 41 reporter plasmids, each of which contains a promoter of corresponding c-di-GMP metab