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Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships

Members of the homeodomain leucine zipper (HDZip) family of transcription factors are present in a wide range of plants, from mosses to higher plants, but not in other eukaryotes. The HDZip genes act in developmental processes, including vascular tissue and trichome development, and several of them...

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Published in:Plant physiology (Bethesda) 2005-09, Vol.139 (1), p.509-518
Main Authors: Henriksson, Eva, Olsson, Anna S.B, Johannesson, Henrik, Johansson, Henrik, Hanson, Johannes, Engström, Peter, Söderman, Eva
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description Members of the homeodomain leucine zipper (HDZip) family of transcription factors are present in a wide range of plants, from mosses to higher plants, but not in other eukaryotes. The HDZip genes act in developmental processes, including vascular tissue and trichome development, and several of them have been suggested to be involved in the mediation of external signals to regulate plant growth. The Arabidopsis (Arabidopsis thaliana) genome contains 47 HDZip genes, which, based on sequence criteria, have been grouped into four different classes: HDZip I to IV. In this article, we present an overview of the class I HDZip genes in Arabidopsis. We describe their expression patterns, transcriptional regulation properties, duplication history, and phylogeny. The phylogeny of HDZip class I genes is supported by data on the duplication history of the genes, as well as the intron/exon patterning of the HDZip-encoding motifs. The HDZip class I genes were found to be widely expressed and partly to have overlapping expression patterns at the organ level. Further, abscisic acid or water deficit treatments and different light conditions affected the transcript levels of a majority of the HDZip I genes. Within the gene family, our data show examples of closely related HDZip genes with similarities in the function of the gene product, but a divergence in expression pattern. In addition, six HDZip class I proteins tested were found to be activators of gene expression. In conclusion, several HDZip I genes appear to regulate similar cellular processes, although in different organs or tissues and in response to different environmental signals.
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The Arabidopsis (Arabidopsis thaliana) genome contains 47 HDZip genes, which, based on sequence criteria, have been grouped into four different classes: HDZip I to IV. In this article, we present an overview of the class I HDZip genes in Arabidopsis. We describe their expression patterns, transcriptional regulation properties, duplication history, and phylogeny. The phylogeny of HDZip class I genes is supported by data on the duplication history of the genes, as well as the intron/exon patterning of the HDZip-encoding motifs. The HDZip class I genes were found to be widely expressed and partly to have overlapping expression patterns at the organ level. Further, abscisic acid or water deficit treatments and different light conditions affected the transcript levels of a majority of the HDZip I genes. Within the gene family, our data show examples of closely related HDZip genes with similarities in the function of the gene product, but a divergence in expression pattern. 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Expression Patterns and Phylogenetic Relationships</title><title>Plant physiology (Bethesda)</title><addtitle>Plant Physiol</addtitle><description>Members of the homeodomain leucine zipper (HDZip) family of transcription factors are present in a wide range of plants, from mosses to higher plants, but not in other eukaryotes. The HDZip genes act in developmental processes, including vascular tissue and trichome development, and several of them have been suggested to be involved in the mediation of external signals to regulate plant growth. The Arabidopsis (Arabidopsis thaliana) genome contains 47 HDZip genes, which, based on sequence criteria, have been grouped into four different classes: HDZip I to IV. In this article, we present an overview of the class I HDZip genes in Arabidopsis. We describe their expression patterns, transcriptional regulation properties, duplication history, and phylogeny. 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subjects abscisic-acid
Amino Acid Sequence
amino acid sequences
Amino acids
Arabidopsis - drug effects
Arabidopsis - genetics
Arabidopsis - radiation effects
Arabidopsis Proteins - chemistry
Arabidopsis Proteins - classification
Arabidopsis Proteins - genetics
Arabidopsis thaliana
Biological and medical sciences
cell-differentiation
DNA-binding
Fundamental and applied biological sciences. Psychology
gene duplication
Gene Expression Profiling
Gene expression regulation
Gene Expression Regulation, Plant - drug effects
Gene Expression Regulation, Plant - radiation effects
Genes
Genes. Genome
Genetics, Genomics, and Molecular Evolution
Genomes
genomics
HD-zip
homeobox gene
homeodomain proteins
Homeodomain Proteins - chemistry
Homeodomain Proteins - classification
Homeodomain Proteins - genetics
homeotic genes
layer-specific gene
leaf development
leucine zipper
Leucine Zippers - genetics
Light
light intensity
MHC class I genes
Molecular and cellular biology
Molecular genetics
molecular sequence data
nucleotide sequences
Phylogenetics
Phylogeny
Plant growth regulators
plant proteins
Plants
protein
RNA
Seedlings
sequence analysis
Sequence Homology, Amino Acid
transcription factors
Transcription Factors - chemistry
Transcription Factors - genetics
transcriptional activation
Water - pharmacology
water-deficit
title Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships
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