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Diurnal oscillation of SBE expression in sorghum endosperm
Spatial and temporal expression patterns of the sorghum SBEI, SBEIIA and SBEIIB genes, encoding, respectively, starch branching enzyme (SBE) I, IIA and IIB, in the developing endosperm of sorghum ( Sorghum bicolor) were studied. Full-length genomic and cDNA clones for sorghum were cloned, and the SB...
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| Published in: | Journal of plant physiology 2009-01, Vol.166 (4), p.428-434 |
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| container_issue | 4 |
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| container_title | Journal of plant physiology |
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| creator | Mutisya, Joel Sun, Chuanxin Rosenquist, Sara Baguma, Yona Jansson, Christer |
| description | Spatial and temporal expression patterns of the sorghum
SBEI,
SBEIIA and
SBEIIB genes, encoding, respectively, starch branching enzyme (SBE) I, IIA and IIB, in the developing endosperm of sorghum (
Sorghum bicolor) were studied. Full-length genomic and cDNA clones for sorghum were cloned, and the
SBEIIA cDNA was used together with gene-specific probes for sorghum
SBEIIB and
SBEI. In contrast to sorghum
SBEIIB, which was expressed primarily in endosperm and embryo,
SBEIIA was also expressed in vegetative tissues. All three genes shared a similar temporal expression profile during endosperm development, with a maximum activity at 15–24
d after pollination. This differed from barley and maize, in which
SBEI gene activity showed a significantly later onset compared to that of
SBEIIA and
SBEIIB. Expression of the three
SBE genes in the sorghum endosperm exhibited a diurnal rhythm during a 24-h cycle. |
| doi_str_mv | 10.1016/j.jplph.2008.06.017 |
| format | article |
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SBEI,
SBEIIA and
SBEIIB genes, encoding, respectively, starch branching enzyme (SBE) I, IIA and IIB, in the developing endosperm of sorghum (
Sorghum bicolor) were studied. Full-length genomic and cDNA clones for sorghum were cloned, and the
SBEIIA cDNA was used together with gene-specific probes for sorghum
SBEIIB and
SBEI. In contrast to sorghum
SBEIIB, which was expressed primarily in endosperm and embryo,
SBEIIA was also expressed in vegetative tissues. All three genes shared a similar temporal expression profile during endosperm development, with a maximum activity at 15–24
d after pollination. This differed from barley and maize, in which
SBEI gene activity showed a significantly later onset compared to that of
SBEIIA and
SBEIIB. Expression of the three
SBE genes in the sorghum endosperm exhibited a diurnal rhythm during a 24-h cycle.</description><identifier>ISSN: 0176-1617</identifier><identifier>ISSN: 1618-1328</identifier><identifier>EISSN: 1618-1328</identifier><identifier>DOI: 10.1016/j.jplph.2008.06.017</identifier><identifier>PMID: 18790548</identifier><identifier>CODEN: JPPHEY</identifier><language>eng</language><publisher>Munich: Elsevier GmbH</publisher><subject>1,4-alpha-Glucan Branching Enzyme - chemistry ; 1,4-alpha-Glucan Branching Enzyme - genetics ; 54 ; 58 ; Agricultural Science ; Amino Acid Sequence ; amino acid sequences ; BARLEY ; Biological and medical sciences ; circadian rhythm ; Circadian Rhythm - genetics ; complementary DNA ; DNA, Complementary - isolation & purification ; DNA, Plant - isolation & purification ; ENDOSPERM ; enzyme activity ; ENZYMES ; Food Science ; Fundamental and applied biological sciences. Psychology ; Gene Dosage ; Gene Expression Profiling ; gene expression regulation ; Gene Expression Regulation, Enzymologic ; Gene Expression Regulation, Plant ; GENES ; Genome, Plant - genetics ; glucosyltransferases ; grain sorghum ; hexosyltransferases ; Hordeum vulgare ; Jordbruksvetenskap ; Livsmedelsvetenskap ; MAIZE ; molecular cloning ; Molecular Sequence Data ; Oscillation ; OSCILLATIONS ; plant development ; Plant physiology and development ; PROBES ; protein content ; SBE ; Seeds - enzymology ; Seeds - genetics ; Sequence Alignment ; sequence analysis ; Sequence Analysis, Protein ; SORGHUM ; Sorghum - enzymology ; Sorghum - genetics ; Sorghum bicolor ; STARCH ; starch branching enzyme ; Zea mays</subject><ispartof>Journal of plant physiology, 2009-01, Vol.166 (4), p.428-434</ispartof><rights>2008 Elsevier GmbH</rights><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c588t-939f35d5e9245e8366ae342fdf705a9c4153769ab769ac22e9f5376628e6646b3</citedby><cites>FETCH-LOGICAL-c588t-939f35d5e9245e8366ae342fdf705a9c4153769ab769ac22e9f5376628e6646b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21100847$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18790548$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/966123$$D View this record in Osti.gov$$Hfree_for_read</backlink><backlink>$$Uhttps://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-256638$$DView record from Swedish Publication Index$$Hfree_for_read</backlink><backlink>$$Uhttps://res.slu.se/id/publ/28884$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Mutisya, Joel</creatorcontrib><creatorcontrib>Sun, Chuanxin</creatorcontrib><creatorcontrib>Rosenquist, Sara</creatorcontrib><creatorcontrib>Baguma, Yona</creatorcontrib><creatorcontrib>Jansson, Christer</creatorcontrib><creatorcontrib>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><title>Diurnal oscillation of SBE expression in sorghum endosperm</title><title>Journal of plant physiology</title><addtitle>J Plant Physiol</addtitle><description>Spatial and temporal expression patterns of the sorghum
SBEI,
SBEIIA and
SBEIIB genes, encoding, respectively, starch branching enzyme (SBE) I, IIA and IIB, in the developing endosperm of sorghum (
Sorghum bicolor) were studied. Full-length genomic and cDNA clones for sorghum were cloned, and the
SBEIIA cDNA was used together with gene-specific probes for sorghum
SBEIIB and
SBEI. In contrast to sorghum
SBEIIB, which was expressed primarily in endosperm and embryo,
SBEIIA was also expressed in vegetative tissues. All three genes shared a similar temporal expression profile during endosperm development, with a maximum activity at 15–24
d after pollination. This differed from barley and maize, in which
SBEI gene activity showed a significantly later onset compared to that of
SBEIIA and
SBEIIB. Expression of the three
SBE genes in the sorghum endosperm exhibited a diurnal rhythm during a 24-h cycle.</description><subject>1,4-alpha-Glucan Branching Enzyme - chemistry</subject><subject>1,4-alpha-Glucan Branching Enzyme - genetics</subject><subject>54</subject><subject>58</subject><subject>Agricultural Science</subject><subject>Amino Acid Sequence</subject><subject>amino acid sequences</subject><subject>BARLEY</subject><subject>Biological and medical sciences</subject><subject>circadian rhythm</subject><subject>Circadian Rhythm - genetics</subject><subject>complementary DNA</subject><subject>DNA, Complementary - isolation & purification</subject><subject>DNA, Plant - isolation & purification</subject><subject>ENDOSPERM</subject><subject>enzyme activity</subject><subject>ENZYMES</subject><subject>Food Science</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Dosage</subject><subject>Gene Expression Profiling</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Enzymologic</subject><subject>Gene Expression Regulation, Plant</subject><subject>GENES</subject><subject>Genome, Plant - genetics</subject><subject>glucosyltransferases</subject><subject>grain sorghum</subject><subject>hexosyltransferases</subject><subject>Hordeum vulgare</subject><subject>Jordbruksvetenskap</subject><subject>Livsmedelsvetenskap</subject><subject>MAIZE</subject><subject>molecular cloning</subject><subject>Molecular Sequence Data</subject><subject>Oscillation</subject><subject>OSCILLATIONS</subject><subject>plant development</subject><subject>Plant physiology and development</subject><subject>PROBES</subject><subject>protein content</subject><subject>SBE</subject><subject>Seeds - enzymology</subject><subject>Seeds - genetics</subject><subject>Sequence Alignment</subject><subject>sequence analysis</subject><subject>Sequence Analysis, Protein</subject><subject>SORGHUM</subject><subject>Sorghum - enzymology</subject><subject>Sorghum - genetics</subject><subject>Sorghum bicolor</subject><subject>STARCH</subject><subject>starch branching enzyme</subject><subject>Zea mays</subject><issn>0176-1617</issn><issn>1618-1328</issn><issn>1618-1328</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNqFkUtv1TAQhS0EoreFX4AEYQErEvyIHRuJRWnLQ6rEopSt5TiTXl_lxsFOKPx7bHJVVsDGIx99czyeg9ATgiuCiXi9q3bTMG0rirGssKgwae6hDRFEloRReR9tkiLKJDRH6DjGHU53LtlDdERkozCv5Qa9OXdLGM1Q-GjdMJjZ-bHwfXH17qKAH1OAGLPixiL6cLNd9gWMnY8ThP0j9KA3Q4THh3qCrt9ffDn7WF5-_vDp7PSytFzKuVRM9Yx3HBStOUgmhAFW077rG8yNsjXhrBHKtPmwlILqsyCoBCFq0bITVK6-8RampdVTcHsTfmpvnI7D0pqQi46gqZSyTvyrv_Ln7uupTh_Ry6IpF4LJhD9fcR_nZGjdDHZr_TiCnbUSglCWmJcrMwX_bYE4672LFtK-RvBL1EIojGkj_gtSzJkidQbZCtrgYwzQ341JsM7x6p3-Ha_O8WosdAovdT092C_tHro_PYc8E_DiAJhozdAHM1oX7zhKSHKrs9GzleuN1-YmJOb6imLC0suYkCY7vV0JSNF-dxDyamC00LmQN9N5989RfwE_EcwA</recordid><startdate>20090101</startdate><enddate>20090101</enddate><creator>Mutisya, Joel</creator><creator>Sun, Chuanxin</creator><creator>Rosenquist, Sara</creator><creator>Baguma, Yona</creator><creator>Jansson, Christer</creator><general>Elsevier GmbH</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>DF2</scope></search><sort><creationdate>20090101</creationdate><title>Diurnal oscillation of SBE expression in sorghum endosperm</title><author>Mutisya, Joel ; Sun, Chuanxin ; Rosenquist, Sara ; Baguma, Yona ; Jansson, Christer</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c588t-939f35d5e9245e8366ae342fdf705a9c4153769ab769ac22e9f5376628e6646b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>1,4-alpha-Glucan Branching Enzyme - chemistry</topic><topic>1,4-alpha-Glucan Branching Enzyme - genetics</topic><topic>54</topic><topic>58</topic><topic>Agricultural Science</topic><topic>Amino Acid Sequence</topic><topic>amino acid sequences</topic><topic>BARLEY</topic><topic>Biological and medical sciences</topic><topic>circadian rhythm</topic><topic>Circadian Rhythm - genetics</topic><topic>complementary DNA</topic><topic>DNA, Complementary - isolation & purification</topic><topic>DNA, Plant - isolation & purification</topic><topic>ENDOSPERM</topic><topic>enzyme activity</topic><topic>ENZYMES</topic><topic>Food Science</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Dosage</topic><topic>Gene Expression Profiling</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Enzymologic</topic><topic>Gene Expression Regulation, Plant</topic><topic>GENES</topic><topic>Genome, Plant - genetics</topic><topic>glucosyltransferases</topic><topic>grain sorghum</topic><topic>hexosyltransferases</topic><topic>Hordeum vulgare</topic><topic>Jordbruksvetenskap</topic><topic>Livsmedelsvetenskap</topic><topic>MAIZE</topic><topic>molecular cloning</topic><topic>Molecular Sequence Data</topic><topic>Oscillation</topic><topic>OSCILLATIONS</topic><topic>plant development</topic><topic>Plant physiology and development</topic><topic>PROBES</topic><topic>protein content</topic><topic>SBE</topic><topic>Seeds - enzymology</topic><topic>Seeds - genetics</topic><topic>Sequence Alignment</topic><topic>sequence analysis</topic><topic>Sequence Analysis, Protein</topic><topic>SORGHUM</topic><topic>Sorghum - enzymology</topic><topic>Sorghum - genetics</topic><topic>Sorghum bicolor</topic><topic>STARCH</topic><topic>starch branching enzyme</topic><topic>Zea mays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mutisya, Joel</creatorcontrib><creatorcontrib>Sun, Chuanxin</creatorcontrib><creatorcontrib>Rosenquist, Sara</creatorcontrib><creatorcontrib>Baguma, Yona</creatorcontrib><creatorcontrib>Jansson, Christer</creatorcontrib><creatorcontrib>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Uppsala universitet</collection><jtitle>Journal of plant physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mutisya, Joel</au><au>Sun, Chuanxin</au><au>Rosenquist, Sara</au><au>Baguma, Yona</au><au>Jansson, Christer</au><aucorp>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</aucorp><aucorp>Sveriges lantbruksuniversitet</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diurnal oscillation of SBE expression in sorghum endosperm</atitle><jtitle>Journal of plant physiology</jtitle><addtitle>J Plant Physiol</addtitle><date>2009-01-01</date><risdate>2009</risdate><volume>166</volume><issue>4</issue><spage>428</spage><epage>434</epage><pages>428-434</pages><issn>0176-1617</issn><issn>1618-1328</issn><eissn>1618-1328</eissn><coden>JPPHEY</coden><abstract>Spatial and temporal expression patterns of the sorghum
SBEI,
SBEIIA and
SBEIIB genes, encoding, respectively, starch branching enzyme (SBE) I, IIA and IIB, in the developing endosperm of sorghum (
Sorghum bicolor) were studied. Full-length genomic and cDNA clones for sorghum were cloned, and the
SBEIIA cDNA was used together with gene-specific probes for sorghum
SBEIIB and
SBEI. In contrast to sorghum
SBEIIB, which was expressed primarily in endosperm and embryo,
SBEIIA was also expressed in vegetative tissues. All three genes shared a similar temporal expression profile during endosperm development, with a maximum activity at 15–24
d after pollination. This differed from barley and maize, in which
SBEI gene activity showed a significantly later onset compared to that of
SBEIIA and
SBEIIB. Expression of the three
SBE genes in the sorghum endosperm exhibited a diurnal rhythm during a 24-h cycle.</abstract><cop>Munich</cop><pub>Elsevier GmbH</pub><pmid>18790548</pmid><doi>10.1016/j.jplph.2008.06.017</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0176-1617 |
| ispartof | Journal of plant physiology, 2009-01, Vol.166 (4), p.428-434 |
| issn | 0176-1617 1618-1328 1618-1328 |
| language | eng |
| recordid | cdi_swepub_primary_oai_slubar_slu_se_28884 |
| source | ScienceDirect Freedom Collection |
| subjects | 1,4-alpha-Glucan Branching Enzyme - chemistry 1,4-alpha-Glucan Branching Enzyme - genetics 54 58 Agricultural Science Amino Acid Sequence amino acid sequences BARLEY Biological and medical sciences circadian rhythm Circadian Rhythm - genetics complementary DNA DNA, Complementary - isolation & purification DNA, Plant - isolation & purification ENDOSPERM enzyme activity ENZYMES Food Science Fundamental and applied biological sciences. Psychology Gene Dosage Gene Expression Profiling gene expression regulation Gene Expression Regulation, Enzymologic Gene Expression Regulation, Plant GENES Genome, Plant - genetics glucosyltransferases grain sorghum hexosyltransferases Hordeum vulgare Jordbruksvetenskap Livsmedelsvetenskap MAIZE molecular cloning Molecular Sequence Data Oscillation OSCILLATIONS plant development Plant physiology and development PROBES protein content SBE Seeds - enzymology Seeds - genetics Sequence Alignment sequence analysis Sequence Analysis, Protein SORGHUM Sorghum - enzymology Sorghum - genetics Sorghum bicolor STARCH starch branching enzyme Zea mays |
| title | Diurnal oscillation of SBE expression in sorghum endosperm |
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