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Fibrosis-Related Gene Profiling in Liver Biopsies of PiZZ α1-Antitrypsin Children with Different Clinical Courses
PiZZ (Glu342Lys) α1-antitrypsin deficiency (AATD) is characterized by intrahepatic AAT polymerization and is a risk factor for liver disease development in children. The majority of PiZZ children are disease free, hence this mutation alone is not sufficient to cause the disease. We investigated Z-AA...
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Published in: | International journal of molecular sciences 2023-01, Vol.24 (3), p.2485 |
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creator | Kamp, Jan C Kappe, Naomi N Moro, Carlos Fernández Fuge, Jan Kuehnel, Mark P Wrenger, Sabine Welte, Tobias Hoek, Bart van Jonigk, Danny D Khedoe, Padmini P S J Strnad, Pavel Björnstedt, Mikael Stolk, Jan Janciauskiene, Sabina Nemeth, Antal |
description | PiZZ (Glu342Lys) α1-antitrypsin deficiency (AATD) is characterized by intrahepatic AAT polymerization and is a risk factor for liver disease development in children. The majority of PiZZ children are disease free, hence this mutation alone is not sufficient to cause the disease. We investigated Z-AAT polymers and the expression of fibrosis-related genes in liver tissues of PiZZ children with different clinical courses. Liver biopsies obtained during 1979-2010 at the Department of Paediatrics, Karolinska University Hospital, Sweden, were subjected to histological re-evaluation, immunohistochemistry and NanoString-based transcriptome profiling using a panel of 760 fibrosis plus 8 bile acid-related genes. Subjects were divided into three groups based on clinical outcomes: NCH (neonatal cholestasis, favourable outcome,
= 5), NCC (neonatal cholestasis, early cirrhosis and liver transplantation,
= 4), and NNCH (no neonatal cholestasis, favourable outcome,
= 5, six biopsies). Hepatocytes containing Z-AAT polymers were abundant in all groups whereas NCC showed higher expression of genes related to liver fibrosis/cirrhosis and lower expression of genes related to lipid, aldehyde/ketone, and bile acid metabolism. Z-AAT accumulation per se cannot explain the clinical outcomes of PiZZ children; however, changes in the expression of specific genes and pathways involved in lipid, fatty acid, and steroid metabolism appear to reflect the degree of liver injury. |
doi_str_mv | 10.3390/ijms24032485 |
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= 5), NCC (neonatal cholestasis, early cirrhosis and liver transplantation,
= 4), and NNCH (no neonatal cholestasis, favourable outcome,
= 5, six biopsies). Hepatocytes containing Z-AAT polymers were abundant in all groups whereas NCC showed higher expression of genes related to liver fibrosis/cirrhosis and lower expression of genes related to lipid, aldehyde/ketone, and bile acid metabolism. Z-AAT accumulation per se cannot explain the clinical outcomes of PiZZ children; however, changes in the expression of specific genes and pathways involved in lipid, fatty acid, and steroid metabolism appear to reflect the degree of liver injury.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms24032485</identifier><identifier>PMID: 36768808</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Age ; Aldehydes ; alpha 1-Antitrypsin Deficiency - pathology ; Bile ; Biopsy ; Child ; Children ; Cholestasis ; Cholestasis - metabolism ; Cirrhosis ; Clinical outcomes ; Cluster analysis ; Disease Progression ; Fatty acids ; Fibrosis ; Gallbladder diseases ; Gene expression ; Genes ; Genotype & phenotype ; Hepatitis ; Hepatocytes ; Humans ; Immunohistochemistry ; Infant, Newborn ; Ketones ; Lipids ; Liver ; Liver - metabolism ; Liver Cirrhosis - genetics ; Liver Cirrhosis - pathology ; Liver diseases ; Metabolism ; Mutation ; Neonates ; Polymers ; Proteins ; Risk factors ; Transcriptomes ; Transplantation</subject><ispartof>International journal of molecular sciences, 2023-01, Vol.24 (3), p.2485</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c407t-217c8dd220dbb1a9c2b34d4c9394de886a935c6bd4531afc371be793e37603053</cites><orcidid>0000-0003-2926-3608 ; 0000-0002-5251-2281 ; 0000-0003-2831-3837 ; 0000-0002-0798-014X ; 0000-0002-5002-409X ; 0000-0001-6527-764X ; 0000-0002-7122-6379 ; 0000-0002-9733-6162</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2774912845/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2774912845?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,25731,27901,27902,36989,36990,44566,53766,53768,74869</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36768808$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttp://kipublications.ki.se/Default.aspx?queryparsed=id:152037603$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Kamp, Jan C</creatorcontrib><creatorcontrib>Kappe, Naomi N</creatorcontrib><creatorcontrib>Moro, Carlos Fernández</creatorcontrib><creatorcontrib>Fuge, Jan</creatorcontrib><creatorcontrib>Kuehnel, Mark P</creatorcontrib><creatorcontrib>Wrenger, Sabine</creatorcontrib><creatorcontrib>Welte, Tobias</creatorcontrib><creatorcontrib>Hoek, Bart van</creatorcontrib><creatorcontrib>Jonigk, Danny D</creatorcontrib><creatorcontrib>Khedoe, Padmini P S J</creatorcontrib><creatorcontrib>Strnad, Pavel</creatorcontrib><creatorcontrib>Björnstedt, Mikael</creatorcontrib><creatorcontrib>Stolk, Jan</creatorcontrib><creatorcontrib>Janciauskiene, Sabina</creatorcontrib><creatorcontrib>Nemeth, Antal</creatorcontrib><title>Fibrosis-Related Gene Profiling in Liver Biopsies of PiZZ α1-Antitrypsin Children with Different Clinical Courses</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>PiZZ (Glu342Lys) α1-antitrypsin deficiency (AATD) is characterized by intrahepatic AAT polymerization and is a risk factor for liver disease development in children. The majority of PiZZ children are disease free, hence this mutation alone is not sufficient to cause the disease. We investigated Z-AAT polymers and the expression of fibrosis-related genes in liver tissues of PiZZ children with different clinical courses. Liver biopsies obtained during 1979-2010 at the Department of Paediatrics, Karolinska University Hospital, Sweden, were subjected to histological re-evaluation, immunohistochemistry and NanoString-based transcriptome profiling using a panel of 760 fibrosis plus 8 bile acid-related genes. Subjects were divided into three groups based on clinical outcomes: NCH (neonatal cholestasis, favourable outcome,
= 5), NCC (neonatal cholestasis, early cirrhosis and liver transplantation,
= 4), and NNCH (no neonatal cholestasis, favourable outcome,
= 5, six biopsies). Hepatocytes containing Z-AAT polymers were abundant in all groups whereas NCC showed higher expression of genes related to liver fibrosis/cirrhosis and lower expression of genes related to lipid, aldehyde/ketone, and bile acid metabolism. Z-AAT accumulation per se cannot explain the clinical outcomes of PiZZ children; however, changes in the expression of specific genes and pathways involved in lipid, fatty acid, and steroid metabolism appear to reflect the degree of liver injury.</description><subject>Age</subject><subject>Aldehydes</subject><subject>alpha 1-Antitrypsin Deficiency - pathology</subject><subject>Bile</subject><subject>Biopsy</subject><subject>Child</subject><subject>Children</subject><subject>Cholestasis</subject><subject>Cholestasis - metabolism</subject><subject>Cirrhosis</subject><subject>Clinical outcomes</subject><subject>Cluster analysis</subject><subject>Disease Progression</subject><subject>Fatty acids</subject><subject>Fibrosis</subject><subject>Gallbladder diseases</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genotype & phenotype</subject><subject>Hepatitis</subject><subject>Hepatocytes</subject><subject>Humans</subject><subject>Immunohistochemistry</subject><subject>Infant, Newborn</subject><subject>Ketones</subject><subject>Lipids</subject><subject>Liver</subject><subject>Liver - metabolism</subject><subject>Liver Cirrhosis - genetics</subject><subject>Liver Cirrhosis - pathology</subject><subject>Liver diseases</subject><subject>Metabolism</subject><subject>Mutation</subject><subject>Neonates</subject><subject>Polymers</subject><subject>Proteins</subject><subject>Risk factors</subject><subject>Transcriptomes</subject><subject>Transplantation</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkc1u1DAUhSMEoj-wY40ssWFBwH-J7Q1SCW1BGokKwaYby7FvOnfIJFM706qP1RfpM-HRDNWUla_v_Xx0fE9RvGH0oxCGfsLFMnFJBZe6elYcMsl5SWmtnu_VB8VRSgtKueCVeVkciFrVWlN9WMQzbOOYMJU_oXcTBHIOA5CLOHbY43BFcCAzvIFIvuC4SgiJjB25wMtL8nDPypNhwine5cFAmjn2IcJAbnGak6_YdZBvE2myDnrXk2ZcxwTpVfGic32C17vzuPh9dvqr-VbOfpx_b05mpZdUTSVnyusQOKehbZkznrdCBumNMDKA1rUzovJ1G2QlmOu8UKwFZQQIVVNBK3FclFvddAurdWtXEZcu3tnRod21_uQKrJRK8w3_ecvnyRKCz96j6588ezoZcG6vxhtrDKtlrbPA-51AHK_XkCa7xOSh790A4zpZrlRV8yr7zei7_9BFXs6Q17GhpGFcy42jD1vK54hShO7RDKN2E77dDz_jb_c_8Aj_S1v8BdturQM</recordid><startdate>20230127</startdate><enddate>20230127</enddate><creator>Kamp, Jan C</creator><creator>Kappe, Naomi N</creator><creator>Moro, Carlos Fernández</creator><creator>Fuge, Jan</creator><creator>Kuehnel, Mark P</creator><creator>Wrenger, Sabine</creator><creator>Welte, Tobias</creator><creator>Hoek, Bart van</creator><creator>Jonigk, Danny D</creator><creator>Khedoe, Padmini P S J</creator><creator>Strnad, Pavel</creator><creator>Björnstedt, Mikael</creator><creator>Stolk, Jan</creator><creator>Janciauskiene, Sabina</creator><creator>Nemeth, Antal</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>D8T</scope><scope>ZZAVC</scope><orcidid>https://orcid.org/0000-0003-2926-3608</orcidid><orcidid>https://orcid.org/0000-0002-5251-2281</orcidid><orcidid>https://orcid.org/0000-0003-2831-3837</orcidid><orcidid>https://orcid.org/0000-0002-0798-014X</orcidid><orcidid>https://orcid.org/0000-0002-5002-409X</orcidid><orcidid>https://orcid.org/0000-0001-6527-764X</orcidid><orcidid>https://orcid.org/0000-0002-7122-6379</orcidid><orcidid>https://orcid.org/0000-0002-9733-6162</orcidid></search><sort><creationdate>20230127</creationdate><title>Fibrosis-Related Gene Profiling in Liver Biopsies of PiZZ α1-Antitrypsin Children with Different Clinical Courses</title><author>Kamp, Jan C ; Kappe, Naomi N ; Moro, Carlos Fernández ; Fuge, Jan ; Kuehnel, Mark P ; Wrenger, Sabine ; Welte, Tobias ; Hoek, Bart van ; Jonigk, Danny D ; Khedoe, Padmini P S J ; Strnad, Pavel ; Björnstedt, Mikael ; Stolk, Jan ; Janciauskiene, Sabina ; Nemeth, Antal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c407t-217c8dd220dbb1a9c2b34d4c9394de886a935c6bd4531afc371be793e37603053</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Age</topic><topic>Aldehydes</topic><topic>alpha 1-Antitrypsin Deficiency - 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The majority of PiZZ children are disease free, hence this mutation alone is not sufficient to cause the disease. We investigated Z-AAT polymers and the expression of fibrosis-related genes in liver tissues of PiZZ children with different clinical courses. Liver biopsies obtained during 1979-2010 at the Department of Paediatrics, Karolinska University Hospital, Sweden, were subjected to histological re-evaluation, immunohistochemistry and NanoString-based transcriptome profiling using a panel of 760 fibrosis plus 8 bile acid-related genes. Subjects were divided into three groups based on clinical outcomes: NCH (neonatal cholestasis, favourable outcome,
= 5), NCC (neonatal cholestasis, early cirrhosis and liver transplantation,
= 4), and NNCH (no neonatal cholestasis, favourable outcome,
= 5, six biopsies). Hepatocytes containing Z-AAT polymers were abundant in all groups whereas NCC showed higher expression of genes related to liver fibrosis/cirrhosis and lower expression of genes related to lipid, aldehyde/ketone, and bile acid metabolism. Z-AAT accumulation per se cannot explain the clinical outcomes of PiZZ children; however, changes in the expression of specific genes and pathways involved in lipid, fatty acid, and steroid metabolism appear to reflect the degree of liver injury.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36768808</pmid><doi>10.3390/ijms24032485</doi><orcidid>https://orcid.org/0000-0003-2926-3608</orcidid><orcidid>https://orcid.org/0000-0002-5251-2281</orcidid><orcidid>https://orcid.org/0000-0003-2831-3837</orcidid><orcidid>https://orcid.org/0000-0002-0798-014X</orcidid><orcidid>https://orcid.org/0000-0002-5002-409X</orcidid><orcidid>https://orcid.org/0000-0001-6527-764X</orcidid><orcidid>https://orcid.org/0000-0002-7122-6379</orcidid><orcidid>https://orcid.org/0000-0002-9733-6162</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Age Aldehydes alpha 1-Antitrypsin Deficiency - pathology Bile Biopsy Child Children Cholestasis Cholestasis - metabolism Cirrhosis Clinical outcomes Cluster analysis Disease Progression Fatty acids Fibrosis Gallbladder diseases Gene expression Genes Genotype & phenotype Hepatitis Hepatocytes Humans Immunohistochemistry Infant, Newborn Ketones Lipids Liver Liver - metabolism Liver Cirrhosis - genetics Liver Cirrhosis - pathology Liver diseases Metabolism Mutation Neonates Polymers Proteins Risk factors Transcriptomes Transplantation |
title | Fibrosis-Related Gene Profiling in Liver Biopsies of PiZZ α1-Antitrypsin Children with Different Clinical Courses |
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