Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian Genomes collaborative project, FANTOM5, we gathered a series of primary data and database systems into the FANTOM web resource (http://fantom.gsc.riken.jp) to facilitate researchers to explore transcriptional...

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Bibliographic Details
Published in:Nucleic acids research 2017-01, Vol.45 (D1), p.D737-D743
Main Authors: Lizio, Marina, Harshbarger, Jayson, Abugessaisa, Imad, Noguchi, Shuei, Kondo, Atsushi, Severin, Jessica, Mungall, Chris, Arenillas, David, Mathelier, Anthony, Medvedeva, Yulia A, Lennartsson, Andreas, Drabløs, Finn, Ramilowski, Jordan A, Rackham, Owen, Gough, Julian, Andersson, Robin, Sandelin, Albin, Ienasescu, Hans, Ono, Hiromasa, Bono, Hidemasa, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R R, Kasukawa, Takeya, Kawaji, Hideya
Format: Article
Language:English
Subjects:
Animals
Computational Biology
Database Issue
Databases, Genetic
Gene Expression Profiling - methods
Genomics - methods
Humans
Mammals - genetics
Medicin och hälsovetenskap
Search Engine
Software
Web Browser
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Summary:Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian Genomes collaborative project, FANTOM5, we gathered a series of primary data and database systems into the FANTOM web resource (http://fantom.gsc.riken.jp) to facilitate researchers to explore transcriptional regulation and cellular states. In the course of the collaboration, primary data and analysis results have been expanded, and functionalities of the database systems enhanced. We believe that our data and web systems are invaluable resources, and we think the scientific community will benefit for this recent update to deepen their understanding of mammalian cellular organization. We introduce the contents of FANTOM5 here, report recent updates in the web resource and provide future perspectives.
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gkw995