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Identifying a contact zone between two phylogeographic lineages of Clematis sibirica (Ranunculeae) in the Tianshan and Altai Mountains
Clematis sibirica, a woody vine occurring primarily under conifer forests, is widespread in northern Eurasia. In this study, we intend to illustrate how the taxon has responded in the area of the Tianshan and Altai Mountains of Central Asia to the Pleistocene climatic fluctuations. The chloroplast i...
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Published in: | Journal of systematics and evolution : JSE 2012-07, Vol.50 (4), p.295-304 |
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description | Clematis sibirica, a woody vine occurring primarily under conifer forests, is widespread in northern Eurasia. In this study, we intend to illustrate how the taxon has responded in the area of the Tianshan and Altai Mountains of Central Asia to the Pleistocene climatic fluctuations. The chloroplast intergenic spacer psbA‐trnH was sequenced for 125 individuals from 28 populations, and a total of eight chlorotypes were identified. The presence of definite phylogeographic structure was detected for the species (NST > GST, P < 0.001), and phylogenetic analysis indicated that the eight chlorotypes were clustered into two divergent lineages. They split at approximately 550–690 ka BP, according to coalescence analysis, coincident with the Pleistocene maximum glacial stage in these mountains, which suggests the restriction of these lineages to separate refugia at that time. Spatial analysis of molecular variance likewise divided the sampled populations into two associations, an Altai and eastern Tianshan group (populations 1–17), and a western Tianshan group (populations 18–28). Low levels of genetic diversity and unimodal mismatch distributions were obtained for both of these groups, suggesting postglacial range expansions. During the course of these expansions, mountain ranges surrounding the Dzungarian Basin probably served as migration corridors. In addition, a contact zone was identified in the central Tianshan and eastern Altai Mountains between the two phylogeographic lineages. |
doi_str_mv | 10.1111/j.1759-6831.2012.00198.x |
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In this study, we intend to illustrate how the taxon has responded in the area of the Tianshan and Altai Mountains of Central Asia to the Pleistocene climatic fluctuations. The chloroplast intergenic spacer psbA‐trnH was sequenced for 125 individuals from 28 populations, and a total of eight chlorotypes were identified. The presence of definite phylogeographic structure was detected for the species (NST > GST, P < 0.001), and phylogenetic analysis indicated that the eight chlorotypes were clustered into two divergent lineages. They split at approximately 550–690 ka BP, according to coalescence analysis, coincident with the Pleistocene maximum glacial stage in these mountains, which suggests the restriction of these lineages to separate refugia at that time. Spatial analysis of molecular variance likewise divided the sampled populations into two associations, an Altai and eastern Tianshan group (populations 1–17), and a western Tianshan group (populations 18–28). Low levels of genetic diversity and unimodal mismatch distributions were obtained for both of these groups, suggesting postglacial range expansions. During the course of these expansions, mountain ranges surrounding the Dzungarian Basin probably served as migration corridors. In addition, a contact zone was identified in the central Tianshan and eastern Altai Mountains between the two phylogeographic lineages.</description><identifier>ISSN: 1674-4918</identifier><identifier>EISSN: 1759-6831</identifier><identifier>DOI: 10.1111/j.1759-6831.2012.00198.x</identifier><language>eng</language><publisher>Malden, USA: Blackwell Publishing Inc</publisher><subject>Clematis ; Clematis sibirica ; coniferous forests ; contact zone ; Evolution ; Genetic diversity ; genetic variation ; intergenic DNA ; Mountains ; phylogeny ; phylogeography ; separate refugia ; Tianshan and Altai Mountains ; variance ; vines</subject><ispartof>Journal of systematics and evolution : JSE, 2012-07, Vol.50 (4), p.295-304</ispartof><rights>2012 Institute of Botany, Chinese Academy of Sciences</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4848-3e5476d9ffb6b3f2f39f79a2aaf91d8aa5b87e04abe371396e9c206211ef08d33</citedby><cites>FETCH-LOGICAL-c4848-3e5476d9ffb6b3f2f39f79a2aaf91d8aa5b87e04abe371396e9c206211ef08d33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.wanfangdata.com.cn/images/PeriodicalImages/zwflxb/zwflxb.jpg</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids></links><search><creatorcontrib>ZHANG, Hong‐Xiang</creatorcontrib><creatorcontrib>ZHANG, Ming‐Li</creatorcontrib><title>Identifying a contact zone between two phylogeographic lineages of Clematis sibirica (Ranunculeae) in the Tianshan and Altai Mountains</title><title>Journal of systematics and evolution : JSE</title><description>Clematis sibirica, a woody vine occurring primarily under conifer forests, is widespread in northern Eurasia. In this study, we intend to illustrate how the taxon has responded in the area of the Tianshan and Altai Mountains of Central Asia to the Pleistocene climatic fluctuations. The chloroplast intergenic spacer psbA‐trnH was sequenced for 125 individuals from 28 populations, and a total of eight chlorotypes were identified. The presence of definite phylogeographic structure was detected for the species (NST > GST, P < 0.001), and phylogenetic analysis indicated that the eight chlorotypes were clustered into two divergent lineages. They split at approximately 550–690 ka BP, according to coalescence analysis, coincident with the Pleistocene maximum glacial stage in these mountains, which suggests the restriction of these lineages to separate refugia at that time. Spatial analysis of molecular variance likewise divided the sampled populations into two associations, an Altai and eastern Tianshan group (populations 1–17), and a western Tianshan group (populations 18–28). Low levels of genetic diversity and unimodal mismatch distributions were obtained for both of these groups, suggesting postglacial range expansions. During the course of these expansions, mountain ranges surrounding the Dzungarian Basin probably served as migration corridors. In addition, a contact zone was identified in the central Tianshan and eastern Altai Mountains between the two phylogeographic lineages.</description><subject>Clematis</subject><subject>Clematis sibirica</subject><subject>coniferous forests</subject><subject>contact zone</subject><subject>Evolution</subject><subject>Genetic diversity</subject><subject>genetic variation</subject><subject>intergenic DNA</subject><subject>Mountains</subject><subject>phylogeny</subject><subject>phylogeography</subject><subject>separate refugia</subject><subject>Tianshan and Altai Mountains</subject><subject>variance</subject><subject>vines</subject><issn>1674-4918</issn><issn>1759-6831</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNqNkcFu1DAQhiMEEqXwDFjiABwS7Dgb2xKXatWWlqVItNUerUkyznpJ7W2c1e72AfrcOKQqV3zxSP7-fzzzJwlhNGPxfFlnTMxUWkrOspyyPKOUKZntXyRHzw8vY12KIi0Uk6-TNyGsKS2FFOVR8njRoBusOVjXEiC1dwPUA3nwDkmFww7RkWHnyWZ16HyLvu1hs7I16axDaDEQb8i8wzsYbCDBVra3NZBPv8BtXb3tEPAzsdFiheTGggsrcARcQ066ASz54bexn3XhbfLKQBfw3dN9nNyend7Mv6WLn-cX85NFWheykCnHWSHKRhlTlRU3ueHKCAU5gFGskQCzSgqkBVTIBeOqRFXntMwZQ0Nlw_lx8nHy3YEz4Fq99tvexY76YWe6fTVukBaUFpH8MJGb3t9vMQz_UMZkUXAuFYuUnKi69yH0aPSmt3fQHzSjesxHr_UYgx5j0KO7_puP3kfp16ev2A4P_63Tl9ensYjydJLbMOD-WQ79b10KLmZ6eXWuz74vl1Re5XoR-fcTb8BraHsb9O11NI7DUqVEdPwDvhawCA</recordid><startdate>201207</startdate><enddate>201207</enddate><creator>ZHANG, Hong‐Xiang</creator><creator>ZHANG, Ming‐Li</creator><general>Blackwell Publishing Inc</general><general>Wiley Subscription Services, Inc</general><general>Key Laboratory of Biogeography and Bioresources in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences,Urumqi 830011, China</general><general>Graduate University of Chinese Academy of Sciences, Beijing 100049, China%Key Laboratory of Biogeography and Bioresources in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences,Urumqi 830011, China</general><general>Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China</general><scope>FBQ</scope><scope>BSCLL</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7ST</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>201207</creationdate><title>Identifying a contact zone between two phylogeographic lineages of Clematis sibirica (Ranunculeae) in the Tianshan and Altai Mountains</title><author>ZHANG, Hong‐Xiang ; ZHANG, Ming‐Li</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4848-3e5476d9ffb6b3f2f39f79a2aaf91d8aa5b87e04abe371396e9c206211ef08d33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Clematis</topic><topic>Clematis sibirica</topic><topic>coniferous forests</topic><topic>contact zone</topic><topic>Evolution</topic><topic>Genetic diversity</topic><topic>genetic variation</topic><topic>intergenic DNA</topic><topic>Mountains</topic><topic>phylogeny</topic><topic>phylogeography</topic><topic>separate refugia</topic><topic>Tianshan and Altai Mountains</topic><topic>variance</topic><topic>vines</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>ZHANG, Hong‐Xiang</creatorcontrib><creatorcontrib>ZHANG, Ming‐Li</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>CrossRef</collection><collection>Environment Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>Journal of systematics and evolution : JSE</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>ZHANG, Hong‐Xiang</au><au>ZHANG, Ming‐Li</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identifying a contact zone between two phylogeographic lineages of Clematis sibirica (Ranunculeae) in the Tianshan and Altai Mountains</atitle><jtitle>Journal of systematics and evolution : JSE</jtitle><date>2012-07</date><risdate>2012</risdate><volume>50</volume><issue>4</issue><spage>295</spage><epage>304</epage><pages>295-304</pages><issn>1674-4918</issn><eissn>1759-6831</eissn><abstract>Clematis sibirica, a woody vine occurring primarily under conifer forests, is widespread in northern Eurasia. In this study, we intend to illustrate how the taxon has responded in the area of the Tianshan and Altai Mountains of Central Asia to the Pleistocene climatic fluctuations. The chloroplast intergenic spacer psbA‐trnH was sequenced for 125 individuals from 28 populations, and a total of eight chlorotypes were identified. The presence of definite phylogeographic structure was detected for the species (NST > GST, P < 0.001), and phylogenetic analysis indicated that the eight chlorotypes were clustered into two divergent lineages. They split at approximately 550–690 ka BP, according to coalescence analysis, coincident with the Pleistocene maximum glacial stage in these mountains, which suggests the restriction of these lineages to separate refugia at that time. Spatial analysis of molecular variance likewise divided the sampled populations into two associations, an Altai and eastern Tianshan group (populations 1–17), and a western Tianshan group (populations 18–28). Low levels of genetic diversity and unimodal mismatch distributions were obtained for both of these groups, suggesting postglacial range expansions. During the course of these expansions, mountain ranges surrounding the Dzungarian Basin probably served as migration corridors. In addition, a contact zone was identified in the central Tianshan and eastern Altai Mountains between the two phylogeographic lineages.</abstract><cop>Malden, USA</cop><pub>Blackwell Publishing Inc</pub><doi>10.1111/j.1759-6831.2012.00198.x</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Clematis Clematis sibirica coniferous forests contact zone Evolution Genetic diversity genetic variation intergenic DNA Mountains phylogeny phylogeography separate refugia Tianshan and Altai Mountains variance vines |
title | Identifying a contact zone between two phylogeographic lineages of Clematis sibirica (Ranunculeae) in the Tianshan and Altai Mountains |
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