The structure of Watson–Crick DNA base pairs obtained by MP2 optimization

The isolated G–C and A–T canonical Watson–Crick DNA base-pairs were optimized by the second-order Møller–Plesset (MP2) method with the 6-311G(d), 6-311G(d,p), 6-311G(2d,p), 6-311G(2df,p) and 6-311G(2df,pd) basis sets. The G–C base pair is found to have an intrinsically nonplanar geometry, while A–T...

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Bibliographic Details
Published in:Chemical physics letters 2005-03, Vol.404 (1), p.164-170
Main Authors: Kurita, Noriyuki, Danilov, Victor I., Anisimov, Victor M.
Format: Article
Language:English
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Summary:The isolated G–C and A–T canonical Watson–Crick DNA base-pairs were optimized by the second-order Møller–Plesset (MP2) method with the 6-311G(d), 6-311G(d,p), 6-311G(2d,p), 6-311G(2df,p) and 6-311G(2df,pd) basis sets. The G–C base pair is found to have an intrinsically nonplanar geometry, while A–T has a planar geometry. The obtained nonplanar geometry of G–C was compared with the experimental as well as previous calculated results to discuss the importance of the nonplanarity of DNA base pairs. The obtained interaction energies between DNA bases vary from −25.29 to −28.88 (G–C) and from −12.34 to −14.94 (A–T) kcal/mol, depending on the basis sets used here.
ISSN:0009-2614
1873-4448
DOI:10.1016/j.cplett.2005.01.087