Infrared and NMR spectra, tautomerism, vibrational assignment, normal coordinate analysis, and quantum mechanical calculations of 4-amino-5-pyrimidinecarbonitrile

• Published in: Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy Molecular and biomolecular spectroscopy, 2013-07, Vol.111, p.277-289
• Main Authors: Afifi, Mahmoud S., Farag, Rabei S., Shaaban, Ibrahim A., Wilson, Lee D., Zoghaib, Wajdi M., Mohamed, Tarek A.
• Format: Article
• Language: English
• Subjects: 4-Aminopyrimidine-5-carbonitrile; Infrared; MP2 and DFT calculations; NMR and mass spectra; Vibrational assignment
• ISSN: 1386-1425
• DOI: 10.1016/j.saa.2013.04.004

A novel IR and NMR (1H and 13C) spectroscopic and computational studies of 4-amino-5-pyrimidinecarbonitrile were carried out using MP2 (full) and B3LYP/6-31G(d) methods. The current study verifies the geometry and the structure of the investigated compound in addition to a complete vibrational assignments and chemical shifts interpretations in favor of amino conformer with pyramidal NH2 moiety. •Infrared spectrum of 4-amino-5-pyrimidinecarbonitrile (APC) has been investigated.•1H and 13C NMR exp/calc. spectra of APC molecule were also investigated.•B3LYP and MP2(full) frequency calculations were carried out for APC at 6-31G∗ basis set.•Spectral interpretations were in good agreements with the simulated spectra.•Computational and experimental measurements favors a pyramidal NH2 moiety (I). The infrared (4000–200cm−1) spectrum for 4-amino-5-pyrimidinecarbonitrile (APC, C5H4N4) was acquired in the solid phase. In addition, the 1H and 13C NMR spectra of APC were obtained in DMSO-d6 along with its mass spectrum. Initially, six isomers were hypothesized and then investigated by means of DFT/B3LYP and MP2(full) quantum mechanical calculations using a 6-31G(d) basis set. Moreover, the 1H and 13C NMR chemical shifts were predicted using a GIAO approximation at the 6-311+G(d,p) basis set and the B3LYP method with (and without) solvent effects using PCM method. The correlation coefficients showed good agreement between the experimental/theoretical chemical shift values of amino tautomers (1 and 2) rather than the eliminated imino tautomers (3–6), in agreement with the current quantum mechanical calculations. Structures 3–6 are less stable than the amino tautomers (1 and 2) by about 5206–8673cm−1 (62.3–103.7kJ/mol). The MP2(full)/6-31G(d) computational results favor the amino structure 1 with a pyramidal NH2 moiety and calculated real vibrational frequencies, however; structure 2 is considered a transition state owing to the calculated imaginary frequency. It is worth mentioning that, the calculated structural parameters suggest a strong conjugation between the amino nitrogen and pyrimidine ring. Aided by frequency calculations, normal coordinate analysis, force constants and potential energy distributions (PEDs), a complete vibrational assignment for the observed bands is proposed herein. Finally, NH2 internal rotation barriers for the stable non-planar isomer (1) were carried out using MP2(full)/6-31G(d) optimized structural parameters. Our results are discussed her