Genome- and transcriptome-wide systematic characterization of bZIP transcription factor family identifies promising members involved in abiotic stress response in sweetpotato

• Published in: Scientia horticulturae 2022-09, Vol.303, p.111185, Article 111185
• Main Authors: Liu, Siyuan, Zhang, Chengbin, Zhu, Qiwei, Guo, Fen, Chai, Ran, Wang, Minxin, Deng, Xiaoyao, Dong, Tingting, Meng, Xiaoqing, Zhu, Mingku
• Format: Article
• Language: English
• Subjects: Abiotic stress; bZIP transcription factor; Expression analysis; Sweetpotato; Systematic characterization
• ISSN: 0304-4238; 1879-1018
• DOI: 10.1016/j.scienta.2022.111185

Basic region/leucine zipper (bZIP) transcription factors function as critical regulators in numerous abiotic stress responses. Massive bZIPs have been systematically identified in plants, but not in sweetpotato. In this study, 87 sweetpotato IbbZIPs unevenly distributed onto 15 chromosomes were identified, and segmental duplications were shown to play dominant roles in the diversity of IbbZIPs. The collinearity between IbbZIPs and the related orthologs from nine plants depicted evolutionary insights into bZIP gene family. Additionally, IbbZIP proteins were clustered into 11 subfamilies while no members were found in the M subfamily, and the regularity of gene structures and conserved motifs was consistent with the subgroup classification. Evidence from transcriptome data and qRT-PCR analysis of 12 selected IbbZIPs revealed that they were significantly and varyingly induced under multiple abiotic stresses (salt, drought, heat and cold) and hormone treatments (ABA, ACC, JA and SA). Consistently, the promoters of IbbZIPs harbored multiple stress- and hormone-related cis-acting elements. Besides, IbbZIP17 and IbbZIP61 exhibited transactivation activity in yeasts, while IbbZIP-14/-69/-84 did not. These findings supply worthy foundations for further functional investigation of IbbZIPs, and multiple members may serve as promising regulators to enhance the abiotic stress tolerance of transgenic plants.