Geometrical picture of reaction in enzyme kinetics

• Published in: The Journal of chemical physics 1989-07, Vol.91 (1), p.186-193
• Main Authors: AN HOANG NGUYEN, FRASER, S. J
• Format: Article
• Language: English
• Subjects: Analytical, structural and metabolic biochemistry; Biological and medical sciences; Enzymes and enzyme inhibitors; Fundamental and applied biological sciences. Psychology; General aspects, investigation methods
• ISSN: 0021-9606; 1089-7690
• DOI: 10.1063/1.457504

A generalization of the steady-state and equilibrium approximations for solving the coupled differential equations of a chemical reaction is presented. This method determines the (steady-state) reaction velocity in closed form. Decay from rapidly equilibrating networks is considered, since many enzyme mechanisms belong to this category. In such systems, after transients have died away, the phase-space flow lies close to a unique trajectory, the slow manifold M. Locating M reduces the description of the system’s progress to a one-dimensional integration. This manifold is a solution of a functional equation, derived from the differential equations for the reaction. As an example, M for Michaelis–Menten–Henri mechanism is found by direct iteration. The solution is very accurate and the appropriate boundary conditions are obeyed automatically. In an arbitrary mechanism, at vanishing decay rate, the slow manifold becomes a line of equilibrium states, which solves the functional equation exactly; it is thus a good initial approximation at finite decay rate. These ideas are applied to a mechanism with both enzyme–substrate and enzyme–product complexes.