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Home-built automated system for microorganisms identification based on laser scattering: A low-cost design and construction using a CNC milling and pattern recognition
The identification of microorganisms between different types and species has great importance in hospitals, food industry and pharmaceutical companies. In recent works, it was found that different microorganisms colony species, which show similar visual morphology, provide a distinctive forward-scat...
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Published in: | The European physical journal. ST, Special topics Special topics, 2020-11, Vol.229 (17-18), p.2833-2841 |
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creator | Kitaoka, Natália A. A. Benevides, Clayton A. Tenório, Rômulo P. |
description | The identification of microorganisms between different types and species has great importance in hospitals, food industry and pharmaceutical companies. In recent works, it was found that different microorganisms colony species, which show similar visual morphology, provide a distinctive forward-scattering pattern when struck by a laser beam. The produced pattern was used as a microorganism signature and identification. Comparing with the current methods of microorganism identification, which are laborious, time-consuming, and costly to implement, the identification based on the image scattering pattern recognition sounds very appealing. In this work, we constructed a non-expensive portable laser scattering image device, based on the acquisition of colony laser scattering images and pattern recognition, to classify, distinguish and identify among microorganisms. We tested our system with three model microorganisms,
Bacillus subtilis
,
Staphylococcus aureus
and
Saccharomyces cerevisiae
. Our results showed a recovery of 92% on the accuracy in the identification of the microorganisms. |
doi_str_mv | 10.1140/epjst/e2020-900212-x |
format | article |
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Bacillus subtilis
,
Staphylococcus aureus
and
Saccharomyces cerevisiae
. Our results showed a recovery of 92% on the accuracy in the identification of the microorganisms.</description><identifier>ISSN: 1951-6355</identifier><identifier>EISSN: 1951-6401</identifier><identifier>DOI: 10.1140/epjst/e2020-900212-x</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Atomic ; Classical and Continuum Physics ; Condensed Matter Physics ; Dynamics and Functionality ; Evolving Soft Matter: Shape ; Materials Science ; Measurement Science and Instrumentation ; Molecular ; Optical and Plasma Physics ; Physics ; Physics and Astronomy ; Regular Article</subject><ispartof>The European physical journal. ST, Special topics, 2020-11, Vol.229 (17-18), p.2833-2841</ispartof><rights>EDP Sciences, Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c246t-406357271e8ed3487c2fd646f9a4eb3bf3129c8b844918875e07e5a79e489363</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Kitaoka, Natália A. A.</creatorcontrib><creatorcontrib>Benevides, Clayton A.</creatorcontrib><creatorcontrib>Tenório, Rômulo P.</creatorcontrib><title>Home-built automated system for microorganisms identification based on laser scattering: A low-cost design and construction using a CNC milling and pattern recognition</title><title>The European physical journal. ST, Special topics</title><addtitle>Eur. Phys. J. Spec. Top</addtitle><description>The identification of microorganisms between different types and species has great importance in hospitals, food industry and pharmaceutical companies. In recent works, it was found that different microorganisms colony species, which show similar visual morphology, provide a distinctive forward-scattering pattern when struck by a laser beam. The produced pattern was used as a microorganism signature and identification. Comparing with the current methods of microorganism identification, which are laborious, time-consuming, and costly to implement, the identification based on the image scattering pattern recognition sounds very appealing. In this work, we constructed a non-expensive portable laser scattering image device, based on the acquisition of colony laser scattering images and pattern recognition, to classify, distinguish and identify among microorganisms. We tested our system with three model microorganisms,
Bacillus subtilis
,
Staphylococcus aureus
and
Saccharomyces cerevisiae
. Our results showed a recovery of 92% on the accuracy in the identification of the microorganisms.</description><subject>Atomic</subject><subject>Classical and Continuum Physics</subject><subject>Condensed Matter Physics</subject><subject>Dynamics and Functionality</subject><subject>Evolving Soft Matter: Shape</subject><subject>Materials Science</subject><subject>Measurement Science and Instrumentation</subject><subject>Molecular</subject><subject>Optical and Plasma Physics</subject><subject>Physics</subject><subject>Physics and Astronomy</subject><subject>Regular Article</subject><issn>1951-6355</issn><issn>1951-6401</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kM1KAzEURoMoWKtv4CIvEJvfmWQpRa1QcFNwGTIzNyVDZ6YkKbRvb9rq1tX9uNzvcjgIPTP6wpikC9j3KS-AU06JoZQzTo43aMaMYqSSlN3-ZaHUPXpIqadUVdyIGfpeTQOQ5hB2GbtDngaXocPplDIM2E8RD6GN0xS3bgxpSDh0MObgQ-tymEbcuFTOS9iVEHEq6wwxjNtHdOfdLsHT75yjzfvbZrki66-Pz-XrmrRcVplIWphqXjPQ0Amp65b7rpKVN05CIxovGDetbrSUhmldK6A1KFcbkNqISsyRvL4tkClF8HYfw-DiyTJqz27sxY29uLFXN_ZYaupaS_szLETbT4c4FtD_ez-_l2zI</recordid><startdate>20201101</startdate><enddate>20201101</enddate><creator>Kitaoka, Natália A. A.</creator><creator>Benevides, Clayton A.</creator><creator>Tenório, Rômulo P.</creator><general>Springer Berlin Heidelberg</general><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20201101</creationdate><title>Home-built automated system for microorganisms identification based on laser scattering</title><author>Kitaoka, Natália A. A. ; Benevides, Clayton A. ; Tenório, Rômulo P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c246t-406357271e8ed3487c2fd646f9a4eb3bf3129c8b844918875e07e5a79e489363</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Atomic</topic><topic>Classical and Continuum Physics</topic><topic>Condensed Matter Physics</topic><topic>Dynamics and Functionality</topic><topic>Evolving Soft Matter: Shape</topic><topic>Materials Science</topic><topic>Measurement Science and Instrumentation</topic><topic>Molecular</topic><topic>Optical and Plasma Physics</topic><topic>Physics</topic><topic>Physics and Astronomy</topic><topic>Regular Article</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kitaoka, Natália A. A.</creatorcontrib><creatorcontrib>Benevides, Clayton A.</creatorcontrib><creatorcontrib>Tenório, Rômulo P.</creatorcontrib><collection>CrossRef</collection><jtitle>The European physical journal. ST, Special topics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kitaoka, Natália A. A.</au><au>Benevides, Clayton A.</au><au>Tenório, Rômulo P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Home-built automated system for microorganisms identification based on laser scattering: A low-cost design and construction using a CNC milling and pattern recognition</atitle><jtitle>The European physical journal. ST, Special topics</jtitle><stitle>Eur. Phys. J. Spec. Top</stitle><date>2020-11-01</date><risdate>2020</risdate><volume>229</volume><issue>17-18</issue><spage>2833</spage><epage>2841</epage><pages>2833-2841</pages><issn>1951-6355</issn><eissn>1951-6401</eissn><abstract>The identification of microorganisms between different types and species has great importance in hospitals, food industry and pharmaceutical companies. In recent works, it was found that different microorganisms colony species, which show similar visual morphology, provide a distinctive forward-scattering pattern when struck by a laser beam. The produced pattern was used as a microorganism signature and identification. Comparing with the current methods of microorganism identification, which are laborious, time-consuming, and costly to implement, the identification based on the image scattering pattern recognition sounds very appealing. In this work, we constructed a non-expensive portable laser scattering image device, based on the acquisition of colony laser scattering images and pattern recognition, to classify, distinguish and identify among microorganisms. We tested our system with three model microorganisms,
Bacillus subtilis
,
Staphylococcus aureus
and
Saccharomyces cerevisiae
. Our results showed a recovery of 92% on the accuracy in the identification of the microorganisms.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1140/epjst/e2020-900212-x</doi><tpages>9</tpages></addata></record> |
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source | Springer Nature |
subjects | Atomic Classical and Continuum Physics Condensed Matter Physics Dynamics and Functionality Evolving Soft Matter: Shape Materials Science Measurement Science and Instrumentation Molecular Optical and Plasma Physics Physics Physics and Astronomy Regular Article |
title | Home-built automated system for microorganisms identification based on laser scattering: A low-cost design and construction using a CNC milling and pattern recognition |
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