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Analysis of the Tomato mTERF Gene Family and Study of the Stress Resistance Function of SLmTERF-13
Mitochondrial transcription termination factor (mTERF) is a DNA-binding protein that is encoded by nuclear genes, ultimately functions in mitochondria and can affect gene expression. By combining with mitochondrial nucleic acids, mTERF regulates the replication, transcription and translation of mito...
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Published in: | Plants (Basel) 2023-08, Vol.12 (15), p.2862 |
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description | Mitochondrial transcription termination factor (mTERF) is a DNA-binding protein that is encoded by nuclear genes, ultimately functions in mitochondria and can affect gene expression. By combining with mitochondrial nucleic acids, mTERF regulates the replication, transcription and translation of mitochondrial genes and plays an important role in the response of plants to abiotic stress. However, there are few studies on
genes in tomato, which limits the in-depth study and utilization of mTERF family genes in tomato stress resistance regulation. In this study, a total of 28
gene family members were obtained through genome-wide mining and identification of the tomato
gene family. Bioinformatics analysis showed that all members of the family contained environmental stress or hormone response elements. Gene expression pattern analysis showed that the selected genes had different responses to drought, high salt and low temperature stress. Most of the genes played key roles under drought and salt stress, and the response patterns were more similar. The VIGS method was used to silence the
gene, which was significantly upregulated under drought and salt stress, and it was found that the resistance ability of silenced plants was decreased under both kinds of stress, indicating that the
gene was involved in the regulation of the tomato abiotic stress response. These results provide important insights for further evolutionary studies and contribute to a better understanding of the role of the
genes in tomato growth and development and abiotic stress response, which will ultimately play a role in future studies of tomato gene function. |
doi_str_mv | 10.3390/plants12152862 |
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genes in tomato, which limits the in-depth study and utilization of mTERF family genes in tomato stress resistance regulation. In this study, a total of 28
gene family members were obtained through genome-wide mining and identification of the tomato
gene family. Bioinformatics analysis showed that all members of the family contained environmental stress or hormone response elements. Gene expression pattern analysis showed that the selected genes had different responses to drought, high salt and low temperature stress. Most of the genes played key roles under drought and salt stress, and the response patterns were more similar. The VIGS method was used to silence the
gene, which was significantly upregulated under drought and salt stress, and it was found that the resistance ability of silenced plants was decreased under both kinds of stress, indicating that the
gene was involved in the regulation of the tomato abiotic stress response. These results provide important insights for further evolutionary studies and contribute to a better understanding of the role of the
genes in tomato growth and development and abiotic stress response, which will ultimately play a role in future studies of tomato gene function.</description><identifier>ISSN: 2223-7747</identifier><identifier>EISSN: 2223-7747</identifier><identifier>DOI: 10.3390/plants12152862</identifier><identifier>PMID: 37571015</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Amino acids ; Bioinformatics ; Chloroplasts ; Chromosomes ; Corn ; DNA-binding protein ; Drought ; Environmental stress ; Gene expression ; gene family ; gene silencing ; Genes ; Genomes ; Localization ; Low temperature ; Mitochondria ; Mitochondrial DNA ; Nucleic acids ; Pattern analysis ; Phylogenetics ; Plant growth ; Proteins ; Regulatory sequences ; Salts ; SLmTERF13 ; Stress analysis ; stress resistance ; tomato ; Tomatoes ; Transcription termination</subject><ispartof>Plants (Basel), 2023-08, Vol.12 (15), p.2862</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c485t-63fde4cc1632b122c86fc06e7f03a319cc0cf8938af6bb3dc4e71415546b7b913</citedby><cites>FETCH-LOGICAL-c485t-63fde4cc1632b122c86fc06e7f03a319cc0cf8938af6bb3dc4e71415546b7b913</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2849041790/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2849041790?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,25731,27901,27902,36989,36990,44566,53766,53768,75096</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37571015$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Su, Ao</creatorcontrib><creatorcontrib>Ge, Siyu</creatorcontrib><creatorcontrib>Zhou, Boyan</creatorcontrib><creatorcontrib>Wang, Ziyu</creatorcontrib><creatorcontrib>Zhou, Liping</creatorcontrib><creatorcontrib>Zhang, Ziwei</creatorcontrib><creatorcontrib>Yan, Xiaoyu</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Li, Dalong</creatorcontrib><creatorcontrib>Zhang, He</creatorcontrib><creatorcontrib>Xu, Xiangyang</creatorcontrib><creatorcontrib>Zhao, Tingting</creatorcontrib><title>Analysis of the Tomato mTERF Gene Family and Study of the Stress Resistance Function of SLmTERF-13</title><title>Plants (Basel)</title><addtitle>Plants (Basel)</addtitle><description>Mitochondrial transcription termination factor (mTERF) is a DNA-binding protein that is encoded by nuclear genes, ultimately functions in mitochondria and can affect gene expression. By combining with mitochondrial nucleic acids, mTERF regulates the replication, transcription and translation of mitochondrial genes and plays an important role in the response of plants to abiotic stress. However, there are few studies on
genes in tomato, which limits the in-depth study and utilization of mTERF family genes in tomato stress resistance regulation. In this study, a total of 28
gene family members were obtained through genome-wide mining and identification of the tomato
gene family. Bioinformatics analysis showed that all members of the family contained environmental stress or hormone response elements. Gene expression pattern analysis showed that the selected genes had different responses to drought, high salt and low temperature stress. Most of the genes played key roles under drought and salt stress, and the response patterns were more similar. The VIGS method was used to silence the
gene, which was significantly upregulated under drought and salt stress, and it was found that the resistance ability of silenced plants was decreased under both kinds of stress, indicating that the
gene was involved in the regulation of the tomato abiotic stress response. These results provide important insights for further evolutionary studies and contribute to a better understanding of the role of the
genes in tomato growth and development and abiotic stress response, which will ultimately play a role in future studies of tomato gene function.</description><subject>Abiotic stress</subject><subject>Amino acids</subject><subject>Bioinformatics</subject><subject>Chloroplasts</subject><subject>Chromosomes</subject><subject>Corn</subject><subject>DNA-binding protein</subject><subject>Drought</subject><subject>Environmental stress</subject><subject>Gene expression</subject><subject>gene family</subject><subject>gene silencing</subject><subject>Genes</subject><subject>Genomes</subject><subject>Localization</subject><subject>Low temperature</subject><subject>Mitochondria</subject><subject>Mitochondrial DNA</subject><subject>Nucleic acids</subject><subject>Pattern analysis</subject><subject>Phylogenetics</subject><subject>Plant growth</subject><subject>Proteins</subject><subject>Regulatory sequences</subject><subject>Salts</subject><subject>SLmTERF13</subject><subject>Stress analysis</subject><subject>stress resistance</subject><subject>tomato</subject><subject>Tomatoes</subject><subject>Transcription termination</subject><issn>2223-7747</issn><issn>2223-7747</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdks1rHCEYh6W0NCHNtcci9NLLpH6OzqmEkE0DC4Hs9izqvJPMMjNu1Snsf183m4RsRFD0eR-U34vQV0ouOG_Iz-1gp5woo5Lpmn1Ap4wxXikl1Mc3-xN0ntKGlKHLpPVndMKVVJRQeYrc5WSHXeoTDh3Oj4DXYbQ54HF9fb_ANzABXtixH3bYTi1e5bndvZCrHCElfA-lOtvJF3KefO7DtCdWyydFRfkX9KmzQ4Lz5_UM_Vlcr69-V8u7m9ury2XlhZa5qnnXgvCe1pw5ypjXdedJDaoj3HLaeE98pxuubVc7x1svQFFBpRS1U66h_AzdHrxtsBuzjf1o484E25ungxAfjI259wMYCa3mrSDgVCeEdpaBE6r2wCTxxO5dvw6u7exGaD1MOdrhSHp8M_WP5iH8M5QIRqmQxfDj2RDD3xlSNmOfPAwlMghzMkxLwolWnBX0-zt0E-ZYctlToiGCqoYU6uJA-RhSitC9voYSs28Hc9wOpeDb2z-84i_h8__M3K_s</recordid><startdate>20230803</startdate><enddate>20230803</enddate><creator>Su, Ao</creator><creator>Ge, 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analysis</topic><topic>Phylogenetics</topic><topic>Plant growth</topic><topic>Proteins</topic><topic>Regulatory sequences</topic><topic>Salts</topic><topic>SLmTERF13</topic><topic>Stress analysis</topic><topic>stress resistance</topic><topic>tomato</topic><topic>Tomatoes</topic><topic>Transcription termination</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Su, Ao</creatorcontrib><creatorcontrib>Ge, Siyu</creatorcontrib><creatorcontrib>Zhou, Boyan</creatorcontrib><creatorcontrib>Wang, Ziyu</creatorcontrib><creatorcontrib>Zhou, Liping</creatorcontrib><creatorcontrib>Zhang, Ziwei</creatorcontrib><creatorcontrib>Yan, Xiaoyu</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Li, Dalong</creatorcontrib><creatorcontrib>Zhang, He</creatorcontrib><creatorcontrib>Xu, Xiangyang</creatorcontrib><creatorcontrib>Zhao, Tingting</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest 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(Basel)</addtitle><date>2023-08-03</date><risdate>2023</risdate><volume>12</volume><issue>15</issue><spage>2862</spage><pages>2862-</pages><issn>2223-7747</issn><eissn>2223-7747</eissn><abstract>Mitochondrial transcription termination factor (mTERF) is a DNA-binding protein that is encoded by nuclear genes, ultimately functions in mitochondria and can affect gene expression. By combining with mitochondrial nucleic acids, mTERF regulates the replication, transcription and translation of mitochondrial genes and plays an important role in the response of plants to abiotic stress. However, there are few studies on
genes in tomato, which limits the in-depth study and utilization of mTERF family genes in tomato stress resistance regulation. In this study, a total of 28
gene family members were obtained through genome-wide mining and identification of the tomato
gene family. Bioinformatics analysis showed that all members of the family contained environmental stress or hormone response elements. Gene expression pattern analysis showed that the selected genes had different responses to drought, high salt and low temperature stress. Most of the genes played key roles under drought and salt stress, and the response patterns were more similar. The VIGS method was used to silence the
gene, which was significantly upregulated under drought and salt stress, and it was found that the resistance ability of silenced plants was decreased under both kinds of stress, indicating that the
gene was involved in the regulation of the tomato abiotic stress response. These results provide important insights for further evolutionary studies and contribute to a better understanding of the role of the
genes in tomato growth and development and abiotic stress response, which will ultimately play a role in future studies of tomato gene function.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>37571015</pmid><doi>10.3390/plants12152862</doi><oa>free_for_read</oa></addata></record> |
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subjects | Abiotic stress Amino acids Bioinformatics Chloroplasts Chromosomes Corn DNA-binding protein Drought Environmental stress Gene expression gene family gene silencing Genes Genomes Localization Low temperature Mitochondria Mitochondrial DNA Nucleic acids Pattern analysis Phylogenetics Plant growth Proteins Regulatory sequences Salts SLmTERF13 Stress analysis stress resistance tomato Tomatoes Transcription termination |
title | Analysis of the Tomato mTERF Gene Family and Study of the Stress Resistance Function of SLmTERF-13 |
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