Saturation Transfer Difference NMR and Molecular Docking Interaction Study of Aralkyl-Thiodigalactosides as Potential Inhibitors of the Human-Galectin-3 Protein

• Published in: International journal of molecular sciences 2024-02, Vol.25 (3), p.1742
• Main Authors: Hőgye, Fanni, Farkas, László Bence, Balogh, Álex Kálmán, Szilágyi, László, Alnukari, Samar, Bajza, István, Borbás, Anikó, Fehér, Krisztina, Illyés, Tünde Zita, Timári, István
• Format: Article
• Language: English
• Subjects: Binding sites; Carbohydrates; Competition; Crystallography; Experiments; Galectin 3 - antagonists & inhibitors; galectin-3; Humans; lectin; Ligands; Magnetic Resonance Spectroscopy; Models, Molecular; molecular docking; Molecular Docking Simulation; NMR spectroscopy; Protein Binding; Proteins; Reagents; Simulation; STD NMR; thiodigalactosides; Thiogalactosides - chemistry; Thiogalactosides - pharmacology
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms25031742

Human Galectin-3 ( Gal-3) is a protein that selectively binds to β-galactosides and holds diverse roles in both normal and pathological circumstances. Therefore, targeting Gal-3 has become a vibrant area of research in the pharmaceutical chemistry. As a step towards the development of novel Gal-3 inhibitors, we synthesized and investigated derivatives of thiodigalactoside (TDG) modified with different aromatic substituents. Specifically, we describe a high-yielding synthetic route of thiodigalactoside (TDG); an optimized procedure for the synthesis of the novel 3,3'-di- -(quinoline-2-yl)methyl)-TDG and three other known, symmetric 3,3'-di- -TDG derivatives ((naphthalene-2yl)methyl, benzyl, (7-methoxy-2H-1-benzopyran-2-on-4-yl)methyl). In the present study, using competition Saturation Transfer Difference (STD) NMR spectroscopy, we determined the dissociation constant (K ) of the former three TDG derivatives produced to characterize the strength of the interaction with the target protein ( Gal-3). Based on the K values determined, the (naphthalen-2-yl)methyl, the (quinolin-2-yl)methyl and the benzyl derivatives bind to Gal-3 94, 30 and 24 times more strongly than TDG. Then, we studied the binding modes of the derivatives in silico by molecular docking calculations. Docking poses similar to the canonical binding modes of well-known Gal-3 inhibitors have been found. However, additional binding forces, cation-π interactions between the arginine residues in the binding pocket of the protein and the aromatic groups of the ligands, have been established as significant features. Our results offer a molecular-level understanding of the varying affinities observed among the synthesized thiodigalactoside derivatives, which can be a key aspect in the future development of more effective ligands of Gal-3.