Investigating Multi-cancer Biomarkers and Their Cross-predictability in the Expression Profiles of Multiple Cancer Types

• Published in: Biomarker insights 2009-01, Vol.2009 (4), p.BMI.S930
• Main Authors: Tseng, George C., Cheng, Chunrong, Yu, Yan Ping, Nelson, Joel, Michalopoulos, George, Luo, Jian-Hua
• Format: Article
• Language: English
• ISSN: 1177-2719; 1177-2719
• DOI: 10.4137/BMI.S930

George C. Tseng1,2, Chunrong Cheng1, Yan Ping Yu3, Joel Nelson3, George Michalopoulos3 and Jian-Hua Luo31Department of Biostatistics, University of Pittsburgh, Pittsburgh, USA. 2Department of Human Genetics, University of Pittsburgh, Pittsburgh, USA. 3Department of Pathology, University of Pittsburgh, Pitts- burgh, USA.AbstractMicroarray technology has been widely applied to the analysis of many malignancies, however, integrative analyses across multiple studies are rarely investigated. In this study we performed a meta-analysis on the expression profiles of four published studies analyzing organ donor, benign tissues adjacent to tumor and tumor tissues from liver, prostate, lung and bladder samples. We identified 99 distinct multi-cancer biomarkers in the comparison of all three tissues in liver and prostate and 44 in the comparison of normal versus tumor in liver, prostate and lung. The bladder samples appeared to have a different list of biomarkers from the other three cancer types. The identified multi-cancer biomarkers achieved high accuracy similar to using whole genome in the within-cancer-type prediction. They also performed superior than the one using whole genome in inter-cancer-type prediction. To test the validity of the multi-cancer biomarkers, 23 independent prostate cancer samples were evaluated and 96% accuracy was achieved in inter-study prediction from the original prostate, liver and lung cancer data sets respectively. The result suggests that the compact lists of multi-cancer biomarkers are important in cancer development and represent the common signatures of malignancies of multiple cancer types. Pathway analysis revealed important tumorogenesis functional categories.