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Archaeal Genome Guardians Give Insights into Eukaryotic DNA Replication and Damage Response Proteins
As the third domain of life, archaea, like the eukarya and bacteria, must have robust DNA replication and repair complexes to ensure genome fidelity. Archaea moreover display a breadth of unique habitats and characteristics, and structural biologists increasingly appreciate these features. As archae...
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Published in: | Archaea 2014-01, Vol.2014 (2014), p.23-46 |
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container_end_page | 46 |
container_issue | 2014 |
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container_title | Archaea |
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creator | Shin, David S. Tainer, John A. Pratt, Ashley J. |
description | As the third domain of life, archaea, like the eukarya and bacteria, must have robust DNA replication and repair complexes to ensure genome fidelity. Archaea moreover display a breadth of unique habitats and characteristics, and structural biologists increasingly appreciate these features. As archaea include extremophiles that can withstand diverse environmental stresses, they provide fundamental systems for understanding enzymes and pathways critical to genome integrity and stress responses. Such archaeal extremophiles provide critical data on the periodic table for life as well as on the biochemical, geochemical, and physical limitations to adaptive strategies allowing organisms to thrive under environmental stress relevant to determining the boundaries for life as we know it. Specifically, archaeal enzyme structures have informed the architecture and mechanisms of key DNA repair proteins and complexes. With added abilities to temperature-trap flexible complexes and reveal core domains of transient and dynamic complexes, these structures provide insights into mechanisms of maintaining genome integrity despite extreme environmental stress. The DNA damage response protein structures noted in this review therefore inform the basis for genome integrity in the face of environmental stress, with implications for all domains of life as well as for biomanufacturing, astrobiology, and medicine. |
doi_str_mv | 10.1155/2014/206735 |
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Specifically, archaeal enzyme structures have informed the architecture and mechanisms of key DNA repair proteins and complexes. With added abilities to temperature-trap flexible complexes and reveal core domains of transient and dynamic complexes, these structures provide insights into mechanisms of maintaining genome integrity despite extreme environmental stress. The DNA damage response protein structures noted in this review therefore inform the basis for genome integrity in the face of environmental stress, with implications for all domains of life as well as for biomanufacturing, astrobiology, and medicine.</description><identifier>ISSN: 1472-3646</identifier><identifier>EISSN: 1472-3654</identifier><identifier>DOI: 10.1155/2014/206735</identifier><identifier>PMID: 24701133</identifier><language>eng</language><publisher>Cairo, Egypt: Hindawi Limiteds</publisher><subject>Archaea ; Archaea - genetics ; Archaeabacteria ; Bacteria ; BASIC BIOLOGICAL SCIENCES ; Binding sites ; Biology ; Deoxyribonucleic acid ; DNA ; DNA repair ; DNA Repair Enzymes - genetics ; DNA Replication ; Enzymes ; Eukaryota - genetics ; Evolution, Molecular ; Genetic aspects ; Genetic research ; Genetics ; Genome, Archaeal ; Genomes ; Genomic Instability ; High temperature ; Microbiology ; Prokaryotes ; Proteins ; Review ; Structure ; Studies</subject><ispartof>Archaea, 2014-01, Vol.2014 (2014), p.23-46</ispartof><rights>Copyright © 2014 David S. Shin et al.</rights><rights>COPYRIGHT 2014 John Wiley & Sons, Inc.</rights><rights>Copyright © 2014 David S. Shin et al. David S. Shin et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright © 2014 David S. Shin et al. 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a726t-591e5986f40e7fb0d778951b88b74efdf3abb9561f7f0665e70aad3ba2259a313</citedby><cites>FETCH-LOGICAL-a726t-591e5986f40e7fb0d778951b88b74efdf3abb9561f7f0665e70aad3ba2259a313</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1561764056/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1561764056?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24701133$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1626219$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><contributor>Brochier-Armanet, Celine</contributor><creatorcontrib>Shin, David S.</creatorcontrib><creatorcontrib>Tainer, John A.</creatorcontrib><creatorcontrib>Pratt, Ashley J.</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)</creatorcontrib><title>Archaeal Genome Guardians Give Insights into Eukaryotic DNA Replication and Damage Response Proteins</title><title>Archaea</title><addtitle>Archaea</addtitle><description>As the third domain of life, archaea, like the eukarya and bacteria, must have robust DNA replication and repair complexes to ensure genome fidelity. Archaea moreover display a breadth of unique habitats and characteristics, and structural biologists increasingly appreciate these features. As archaea include extremophiles that can withstand diverse environmental stresses, they provide fundamental systems for understanding enzymes and pathways critical to genome integrity and stress responses. Such archaeal extremophiles provide critical data on the periodic table for life as well as on the biochemical, geochemical, and physical limitations to adaptive strategies allowing organisms to thrive under environmental stress relevant to determining the boundaries for life as we know it. Specifically, archaeal enzyme structures have informed the architecture and mechanisms of key DNA repair proteins and complexes. With added abilities to temperature-trap flexible complexes and reveal core domains of transient and dynamic complexes, these structures provide insights into mechanisms of maintaining genome integrity despite extreme environmental stress. The DNA damage response protein structures noted in this review therefore inform the basis for genome integrity in the face of environmental stress, with implications for all domains of life as well as for biomanufacturing, astrobiology, and medicine.</description><subject>Archaea</subject><subject>Archaea - genetics</subject><subject>Archaeabacteria</subject><subject>Bacteria</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Binding sites</subject><subject>Biology</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA repair</subject><subject>DNA Repair Enzymes - genetics</subject><subject>DNA Replication</subject><subject>Enzymes</subject><subject>Eukaryota - genetics</subject><subject>Evolution, Molecular</subject><subject>Genetic aspects</subject><subject>Genetic research</subject><subject>Genetics</subject><subject>Genome, Archaeal</subject><subject>Genomes</subject><subject>Genomic Instability</subject><subject>High temperature</subject><subject>Microbiology</subject><subject>Prokaryotes</subject><subject>Proteins</subject><subject>Review</subject><subject>Structure</subject><subject>Studies</subject><issn>1472-3646</issn><issn>1472-3654</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNkl1v0zAUhiMEYmNwxTUoGjcI1OFvxzdI1TZK0QQTgmvrJDlpPVK72OkQ_x53Gd2GkECR8nH8-LH95hTFU0qOKJXyDSNU5JvSXN4r9qnQbMKVFPd370LtFY9SuiCEEa2qh8UeE5pQyvl-0U5jswSEvpyhDyssZxuIrQOfypm7xHLuk1ssh1Q6P4TydPMN4s8wuKY8-TgtP-O6dw0MLvgSfFuewAoWmMtpHXzC8jyGAZ1Pj4sHHfQJn1w_D4qv706_HL-fnH2azY-nZxPQTA0TaShKU6lOENRdTVqtKyNpXVW1Fti1HYe6NlLRTndEKYmaALS8BsakAU75QTEfvW2AC7uObpV3awM4e1UIcWEh5s33aE3G27yAMYYLSRRwyCJtqFSSaMmz6-3oWm_qFbYN-iFCf0d6d8S7pV2ES8uNJKIyWXA4CkIanE2NG7BZNsF7bAZLFVOMbqGX16vE8H2DabArlxrse_AYNslSyShngjP1HyhVWlJayYy--AO9CJvoc_SZUlQrQaS6oRaQA3G-C_kczVZqp4IqaZQQJFNHf6Hy1eLK5eNg53L9zoTX44QmhpQidrvMKLHbhrXbhrVjw2b6-e2Yd-zvDs3AqxFYOt_CD_cP27MRxoxgBztYSCG0yOMfxnFw0eW_sovlPFtydkwSwq-MlNmb0li79cGtUPwX-bQLbA</recordid><startdate>20140101</startdate><enddate>20140101</enddate><creator>Shin, David S.</creator><creator>Tainer, John A.</creator><creator>Pratt, Ashley J.</creator><general>Hindawi Limiteds</general><general>Hindawi Puplishing Corporation</general><general>Hindawi Publishing Corporation</general><general>John Wiley & Sons, Inc</general><general>Hindawi Limited</general><general>Hindawi</general><scope>188</scope><scope>ADJCN</scope><scope>AHFXO</scope><scope>RHU</scope><scope>RHW</scope><scope>RHX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>CWDGH</scope><scope>D1I</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P5Z</scope><scope>P62</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7QL</scope><scope>7TM</scope><scope>7TN</scope><scope>C1K</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20140101</creationdate><title>Archaeal Genome Guardians Give Insights into Eukaryotic DNA Replication and Damage Response Proteins</title><author>Shin, David S. ; Tainer, John A. ; Pratt, Ashley J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a726t-591e5986f40e7fb0d778951b88b74efdf3abb9561f7f0665e70aad3ba2259a313</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Archaea</topic><topic>Archaea - genetics</topic><topic>Archaeabacteria</topic><topic>Bacteria</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Binding sites</topic><topic>Biology</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA repair</topic><topic>DNA Repair Enzymes - genetics</topic><topic>DNA Replication</topic><topic>Enzymes</topic><topic>Eukaryota - genetics</topic><topic>Evolution, Molecular</topic><topic>Genetic aspects</topic><topic>Genetic research</topic><topic>Genetics</topic><topic>Genome, Archaeal</topic><topic>Genomes</topic><topic>Genomic Instability</topic><topic>High temperature</topic><topic>Microbiology</topic><topic>Prokaryotes</topic><topic>Proteins</topic><topic>Review</topic><topic>Structure</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shin, David S.</creatorcontrib><creatorcontrib>Tainer, John A.</creatorcontrib><creatorcontrib>Pratt, Ashley J.</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). 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National Energy Research Scientific Computing Center (NERSC)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Archaeal Genome Guardians Give Insights into Eukaryotic DNA Replication and Damage Response Proteins</atitle><jtitle>Archaea</jtitle><addtitle>Archaea</addtitle><date>2014-01-01</date><risdate>2014</risdate><volume>2014</volume><issue>2014</issue><spage>23</spage><epage>46</epage><pages>23-46</pages><issn>1472-3646</issn><eissn>1472-3654</eissn><abstract>As the third domain of life, archaea, like the eukarya and bacteria, must have robust DNA replication and repair complexes to ensure genome fidelity. Archaea moreover display a breadth of unique habitats and characteristics, and structural biologists increasingly appreciate these features. 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subjects | Archaea Archaea - genetics Archaeabacteria Bacteria BASIC BIOLOGICAL SCIENCES Binding sites Biology Deoxyribonucleic acid DNA DNA repair DNA Repair Enzymes - genetics DNA Replication Enzymes Eukaryota - genetics Evolution, Molecular Genetic aspects Genetic research Genetics Genome, Archaeal Genomes Genomic Instability High temperature Microbiology Prokaryotes Proteins Review Structure Studies |
title | Archaeal Genome Guardians Give Insights into Eukaryotic DNA Replication and Damage Response Proteins |
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