Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

• Published in: Cancer informatics 2019, Vol.18, p.1176935119843507
• Main Authors: Gober, Madeline Krentz, Flight, Robert M, Lambert, Joshua, Moseley, Hunter, Stromberg, Arnold, Black, Esther P
• Format: Article
• Language: English
• Subjects: Algorithms; Apoptosis; Bioinformatics; Biotechnology; Casein; Casein kinase II; Cell death; Cell lines; Deregulation; Enzymatic activity; Epidermal growth factor; Gene expression; Genes; Growth factors; Hypotheses; Inhibitors; K-Ras protein; Kinases; Lung cancer; Lungs; MicroRNAs; miRNA; Mutation; Non-small cell lung carcinoma; Original Research; Pharmacology; Protein interaction; Proteins; Resistance factors; Ribonucleic acid; RNA; Software; Synergism; Target recognition; Therapeutic targets; Tumors; Viability
• ISSN: 1176-9351; 1176-9351
• DOI: 10.1177/1176935119843507

KRAS-activation mutations occur in 25% to 40% of lung adenocarcinomas and are a known mechanism of epidermal growth factor receptor inhibitor (EGFRI) resistance. There are currently no targeted therapies approved specifically for the treatment of KRAS-active non–small cell lung cancers (NSCLC). Attempts to target mutant KRAS have failed in clinical studies leaving no targeted therapy option for these patients. To circumvent targeting KRAS directly, we hypothesized that targeting proteins connected to KRAS function rather than targeting KRAS directly could induce cell death in KRAS-active NSCLC cells. To identify potential targets, we leveraged 2 gene expression data sets derived from NSCLC cell lines either resistant and sensitive to EGFRI treatment. Using a Feasible Solutions Algorithm, we identified genes with deregulated expression in KRAS-active cell lines and used STRING as a source for known protein-protein interactions. This process generated a network of 385 deregulated proteins including KRAS and other known mechanisms of EGFRI resistance. To identify candidate drug targets from the network for further study, we selected proteins with the greatest number of connections within the network and possessed an enzymatic activity that could be inhibited with an existing pharmacological agent. Of the potential candidates, the pharmacological impact of targeting casein kinase 2 (CK2) as a single target was tested, and we found a modest reduction in viability in KRAS-active NSCLC cells. MEK was chosen as a second target from outside the network because it lies downstream of KRAS and MEK inhibition can overcome resistance to CK2 inhibitors. We found that CK2 and MEK inhibition demonstrates moderate synergy in inducing apoptosis in KRAS-active NSCLC cells. These results suggest promise for a combination inhibitor strategy for treating KRAS-active NSCLC.