The temporal expression patterns of brain transcriptome during chicken development and ageing

• Published in: BMC genomics 2018-12, Vol.19 (1), p.917-917, Article 917
• Main Authors: Xu, Zhongxian, Che, Tiandong, Li, Feng, Tian, Kai, Zhu, Qing, Mishra, Shailendra Kumar, Dai, Yifei, Li, Mingzhou, Li, Diyan
• Format: Article
• Language: English
• Subjects: Age; Aging; Aging (Biology); Aging - genetics; Analysis; Animals; Axonogenesis; Axons; Bioinformatics; Brain; Brain - growth & development; Brain - metabolism; Brain research; Cerebrum; Chick Embryo; Chicken brain; Chickens; Chickens - genetics; Chromosomes; Development and ageing; Embryos; Female; Gene expression; Gene Expression Profiling; Gene regulation; Gene Regulatory Networks; Genes; Genetic aspects; Genomes; Genomics; Growth; Health aspects; Identification and classification; Immune response; Immune system; Influence; Mammals; Molecular modelling; Non-coding RNA; Poultry; Proteins; Regulatory mechanisms (biology); Ribonucleic acid; RNA; RNA - chemistry; RNA - isolation & purification; RNA - metabolism; RNA sequencing; RNA, Long Noncoding - metabolism; RNA, Messenger - metabolism; Sequence Analysis, RNA; Synapses; Synaptogenesis; Temporal expression patterns; Transcription; Transcription (Genetics); Transcriptome; Vertebrates
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-018-5301-x

The transcriptional profiles of mammals during brain development and ageing have been characterized. However the global expression patterns of transcriptome in the chicken brain have not been explored. Here, we systematically investigated the temporal expression profiles of lncRNAs and mRNAs across 8 stages (including 3 embryonic stages, 2 growth stages and 3 adult stages) in the female chicken cerebrum. We identified 39,907 putative lncRNAs and 14,558 mRNAs, investigated the temporal expression patterns by tracking a set of age-dependent genes and predicted potential biological functions of lncRNAs based on co-expression network. The results showed that genes with functions in development, synapses and axons exhibited a progressive decay; genes related to immune response were up-regulated with age. These results may reflect changes in the regulation of transcriptional networks and provide non-coding RNA gene candidates for further studies and would contribute to a comprehensive understanding of the molecular mechanisms of chicken development and may provide insights or deeper understanding regarding the regulatory mechanisms of age-dependent protein coding and non-protein coding genes in chicken. In addition, as the chicken is an important model organism bridging the evolutionary gap between mammals and other vertebrates, these high resolution data may provide a novel evidence to improve our comprehensive understanding of the brain transcriptome during vertebrate evolution.