Satellitome analysis on the pale-breasted thrush Turdus leucomelas (Passeriformes; Turdidae) uncovers the putative co-evolution of sex chromosomes and satellite DNAs

• Published in: Scientific reports 2024-09, Vol.14 (1), p.20656-14, Article 20656
• Main Authors: Souza, Guilherme Mota, Kretschmer, Rafael, Toma, Gustavo Akira, de Oliveira, Alan Moura, Deon, Geize Aparecida, Setti, Princia Grejo, Zeni dos Santos, Rodrigo, Goes, Caio Augusto Gomes, Del Valle Garnero, Analía, Gunski, Ricardo José, de Oliveira, Edivaldo Herculano Correa, Porto-Foresti, Fabio, Liehr, Thomas, Utsunomia, Ricardo, de Bello Cioffi, Marcelo
• Format: Article
• Language: English
• Subjects: 631/208/1405; 631/208/182; 631/208/212; Animals; Chromosomes; Coevolution; Comparative Genomic Hybridization; Cytogenetics; DNA, Satellite - genetics; Evolution; Evolution, Molecular; Evolutionary genetics; Female; Gene mapping; Genomics; Heterochromatin; Heterochromatin - genetics; Humanities and Social Sciences; Hybridization; In Situ Hybridization, Fluorescence; Male; Microsatellite Repeats - genetics; Molecular cytogenetics; multidisciplinary; Neo sex chromosomes; Passeriformes - genetics; satDNA; Science; Science (multidisciplinary); Sex chromosomes; Sex Chromosomes - genetics; Translocation; Turdus leucomelas; W chromosomes; Z chromosomes
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-024-71635-5

Do all birds' sex chromosomes follow the same canonical one-way direction of evolution? We combined cytogenetic and genomic approaches to analyze the process of the W chromosomal differentiation in two selected Passeriform species, named the Pale-breasted Thrush Turdus leucomelas and the Rufous-bellied thrush T. rufiventris . We characterized the full catalog of satellite DNAs (satellitome) of T. leucomelas , and the 10 TleSatDNA classes obtained together with 16 microsatellite motifs were in situ mapped in both species. Additionally, using Comparative Genomic Hybridization (CGH) assays, we investigated their intragenomic variations. The W chromosomes of both species did not accumulate higher amounts of both heterochromatin and repetitive sequences. However, while T. leucomelas showed a heterochromatin-poor W chromosome with a very complex evolutionary history, T. rufiventris showed a small and partially heterochromatic W chromosome that represents a differentiated version of its original autosomal complement (Z chromosome). The combined approach of CGH and sequential satDNA mapping suggest the occurrence of a former W-autosomal translocation event in T. leucomelas , which had an impact on the W chromosome in terms of sequence gains and losses. At the same time, an autosome, which is present in both males and females in a polymorphic state, lost sequences and integrated previously W-specific ones. This putative W-autosomal translocation, however, did not result in the emergence of a multiple-sex chromosome system. Instead, the generation of a neo-W chromosome suggests an unexpected evolutionary trajectory that deviates from the standard canonical model of sex chromosome evolution.