De novo reconstruction of human adipose transcriptome reveals conserved lncRNAs as regulators of brown adipogenesis

• Published in: Nature communications 2018-04, Vol.9 (1), p.1329-14, Article 1329
• Main Authors: Ding, Chunming, Lim, Yen Ching, Chia, Sook Yoong, Walet, Arcinas Camille Esther, Xu, Shaohai, Lo, Kinyui Alice, Zhao, Yanling, Zhu, Dewen, Shan, Zhihui, Chen, Qingfeng, Leow, Melvin Khee-Shing, Xu, Dan, Sun, Lei
• Format: Article
• Language: English
• Subjects: 13/106; 13/89; 38; 38/43; 38/77; 631/114; 631/337/384/2568; 64; 64/60; Adipocytes; Adipocytes, Brown - cytology; Adipocytes, Brown - metabolism; Adipogenesis; Adipogenesis - genetics; Adipose tissue; Adipose tissue (brown); Adipose Tissue, Brown - growth & development; Adipose Tissue, Brown - metabolism; Animals; Bats; Cell Differentiation - genetics; Cells, Cultured; Cold Temperature; Conserved Sequence; Diabetes mellitus; DNA-Binding Proteins - genetics; Dyslipidemia; Fetuses; Gene expression; Gene Knockdown Techniques; Genetic Markers; Health risks; Humanities and Social Sciences; Humans; Hypertension; Mice; multidisciplinary; Obesity - genetics; Obesity - metabolism; Regulators; Ribonucleic acid; Risk analysis; Risk factors; RNA; RNA, Long Noncoding - genetics; RNA, Long Noncoding - metabolism; Science; Science (multidisciplinary); Thermogenesis; Tissue Distribution; Transcription Factors - genetics; Transcriptome
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-018-03754-3

Obesity has emerged as an alarming health crisis due to its association with metabolic risk factors such as diabetes, dyslipidemia, and hypertension. Recent work has demonstrated the multifaceted roles of lncRNAs in regulating mouse adipose development, but their implication in human adipocytes remains largely unknown. Here we present a catalog of 3149 adipose active lncRNAs, of which 909 are specifically detected in brown adipose tissue (BAT) by performing deep RNA-seq on adult subcutaneous, omental white adipose tissue and fetal BATs. A total of 169 conserved human lncRNAs show positive correlation with their nearby mRNAs, and knockdown assay supports a role of lncRNAs in regulating their nearby mRNAs. The knockdown of one of those, lnc-dPrdm16 , impairs brown adipocyte differentiation in vitro and a significant reduction of BAT-selective markers in in vivo. Together, our work provides a comprehensive human adipose catalog built from diverse fat depots and establishes a roadmap to facilitate the discovery of functional lncRNAs in adipocyte development. Long non-coding RNAs are known to regulate mouse white adipose tissue development and brown adipose tissue program expression. Here, the authors construct a roadmap for human long non-coding RNAs expressed in fetal brown adipose tissue, adult omental and subcutaneous white adipose tissues.