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Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene
The presence of Frankia strains in soil samples collected from northern areas of Pakistan was detected by inoculating Coriaria nepalensis and Datisca cannabina plants. The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil sampl...
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| Published in: | Applied and Environmental Microbiology 1994-07, Vol.60 (7), p.2371-2376 |
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| container_title | Applied and Environmental Microbiology |
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| creator | Mirza, M.S Hameed, S Akkermans, A.D.L |
| description | The presence of Frankia strains in soil samples collected from northern areas of Pakistan was detected by inoculating Coriaria nepalensis and Datisca cannabina plants. The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil samples from other localities failed to result in nodulation. An oligonucleotide probe (COR/DAT) directed against the 16S rRNA gene of the endophytes of Coriaria and Datisca spp. that did not cross-react with the RNA gene of Frankia strains isolated from other hosts was developed. Genetic diversity among Frankia strains nodulating D. cannabina was determined by sequence analysis of the partial 16S rRNA gene amplified from nodules induced by soil samples from different localities by PCR. Four types of Frankia sequences and one non-Frankia sequence were detected by hybridization with a Frankia genus probe and the COR/DAT probe as well as by sequence analysis of the cloned PCR products |
| doi_str_mv | 10.1128/aem.60.7.2371-2376.1994 |
| format | article |
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The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil samples from other localities failed to result in nodulation. An oligonucleotide probe (COR/DAT) directed against the 16S rRNA gene of the endophytes of Coriaria and Datisca spp. that did not cross-react with the RNA gene of Frankia strains isolated from other hosts was developed. Genetic diversity among Frankia strains nodulating D. cannabina was determined by sequence analysis of the partial 16S rRNA gene amplified from nodules induced by soil samples from different localities by PCR. Four types of Frankia sequences and one non-Frankia sequence were detected by hybridization with a Frankia genus probe and the COR/DAT probe as well as by sequence analysis of the cloned PCR products</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/aem.60.7.2371-2376.1994</identifier><identifier>PMID: 7521157</identifier><identifier>CODEN: AEMIDF</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>Actinomycetales - genetics ; Actinomycetales - isolation & purification ; ADN ; Agronomy. Soil science and plant productions ; AMPLIFICATION CHAINE POLYMERASE ; Animal, plant and microbial ecology ; ARN RIBOSOMAL ; ARN RIBOSOMIAL ; Bacteria ; Base Sequence ; Biological and medical sciences ; Cellular biology ; DATISCACEAE ; DICOTILEDONEAS ; DICOTYLEDONE ; DIFERENCIAS BIOLOGICAS ; DIFFERENCE BIOLOGIQUE ; DNA Primers - genetics ; DNA Probes - genetics ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Economic plant physiology ; Flowers & plants ; FRANKIA ; Fundamental and applied biological sciences. Psychology ; GENE ; GENES ; Genes, Bacterial ; Genetic Variation ; Laboratorium voor Microbiologie ; Microbial ecology ; Microbiological Laboratory ; Microbiologie ; Microbiology ; Microflora of plants ; Molecular Sequence Data ; Nitrogen Fixation ; Plants - microbiology ; Polymerase Chain Reaction ; REACCION DE CADENAS DE POLIMERASA ; Ribonucleic acid ; RIBOSOMAS ; RIBOSOME ; RNA ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; SECUENCIA NUCLEICA ; Sequence Homology, Nucleic Acid ; SEQUENCE NUCLEIQUE ; Soil Microbiology ; Soils ; Species Specificity ; Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</subject><ispartof>Applied and Environmental Microbiology, 1994-07, Vol.60 (7), p.2371-2376</ispartof><rights>1994 INIST-CNRS</rights><rights>Copyright American Society for Microbiology Jul 1994</rights><rights>Wageningen University & Research</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5085-95c466f1617f9f1a87a03739dfc6634808d82beaeed8473b0a204049a879c3da3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC201658/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC201658/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3188,3189,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=4199777$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/7521157$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mirza, M.S</creatorcontrib><creatorcontrib>Hameed, S</creatorcontrib><creatorcontrib>Akkermans, A.D.L</creatorcontrib><title>Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>The presence of Frankia strains in soil samples collected from northern areas of Pakistan was detected by inoculating Coriaria nepalensis and Datisca cannabina plants. The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil samples from other localities failed to result in nodulation. An oligonucleotide probe (COR/DAT) directed against the 16S rRNA gene of the endophytes of Coriaria and Datisca spp. that did not cross-react with the RNA gene of Frankia strains isolated from other hosts was developed. Genetic diversity among Frankia strains nodulating D. cannabina was determined by sequence analysis of the partial 16S rRNA gene amplified from nodules induced by soil samples from different localities by PCR. Four types of Frankia sequences and one non-Frankia sequence were detected by hybridization with a Frankia genus probe and the COR/DAT probe as well as by sequence analysis of the cloned PCR products</description><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - isolation & purification</subject><subject>ADN</subject><subject>Agronomy. Soil science and plant productions</subject><subject>AMPLIFICATION CHAINE POLYMERASE</subject><subject>Animal, plant and microbial ecology</subject><subject>ARN RIBOSOMAL</subject><subject>ARN RIBOSOMIAL</subject><subject>Bacteria</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Cellular biology</subject><subject>DATISCACEAE</subject><subject>DICOTILEDONEAS</subject><subject>DICOTYLEDONE</subject><subject>DIFERENCIAS BIOLOGICAS</subject><subject>DIFFERENCE BIOLOGIQUE</subject><subject>DNA Primers - genetics</subject><subject>DNA Probes - genetics</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Economic plant physiology</subject><subject>Flowers & plants</subject><subject>FRANKIA</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>GENE</subject><subject>GENES</subject><subject>Genes, Bacterial</subject><subject>Genetic Variation</subject><subject>Laboratorium voor Microbiologie</subject><subject>Microbial ecology</subject><subject>Microbiological Laboratory</subject><subject>Microbiologie</subject><subject>Microbiology</subject><subject>Microflora of plants</subject><subject>Molecular Sequence Data</subject><subject>Nitrogen Fixation</subject><subject>Plants - microbiology</subject><subject>Polymerase Chain Reaction</subject><subject>REACCION DE CADENAS DE POLIMERASA</subject><subject>Ribonucleic acid</subject><subject>RIBOSOMAS</subject><subject>RIBOSOME</subject><subject>RNA</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>SECUENCIA NUCLEICA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>SEQUENCE NUCLEIQUE</subject><subject>Soil Microbiology</subject><subject>Soils</subject><subject>Species Specificity</subject><subject>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1994</creationdate><recordtype>article</recordtype><recordid>eNqFks9u1DAQxiMEKkvhBZAQBiFuWew48Z8Dh2ppC1IFqKVna-I4uy6Js9jZrvYJ-tpMtEtFuXAZS57fNx5_-rLsNaNzxgr1AVw_F3Qu5wWXLMci5kzr8lE2Y1SrvOJcPM5mlGqdF0VJn2bPUrqhlJZUqKPsSFYFY5WcZXfnLrjRW9L4WxeTH3dkaMknGH2yQCyEALUPkNuhX-Nl3TlyFiH89EDSGMGHRCCRxo0u9j64htQ7ktyvjQvWEQjQ7ZJP08hx5cj3xWUO_brzrUeSiSsSL7-ekCWu8Dx70kKX3IvDeZxdn53-WHzOL76df1mcXOS2oqrKdWVLIVommGx1y0BJoFxy3bRWCF4qqhpV1A6ca1QpeU2hwC-XGkFteQP8ONP7uVvAZ33AYgJE65MZwJvO1xHizmw30YRuOtabOplCKFmh9uNei3e9a6wL6EBn1tH3k2bSP-wEvzLL4dYUlIlKof79QR8HdCiNpkeXXddBcMMmGSmEEhUT_wWZ0CUthEbw7T_gzbCJ6DquTCtdKFpyhOQesnFIKbr2fmNGzRQmg2EyghpppjBNRZgpTKh89feH73WH9GD_3aEPmJauxWBMRv7BShwi5YS92WMrv1xtfXQGUv_wUWRe7pkWBgPLiGOur3RFBaeM_wbwnukL</recordid><startdate>19940701</startdate><enddate>19940701</enddate><creator>Mirza, M.S</creator><creator>Hameed, S</creator><creator>Akkermans, A.D.L</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>5PM</scope><scope>QVL</scope></search><sort><creationdate>19940701</creationdate><title>Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene</title><author>Mirza, M.S ; Hameed, S ; Akkermans, A.D.L</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5085-95c466f1617f9f1a87a03739dfc6634808d82beaeed8473b0a204049a879c3da3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1994</creationdate><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - isolation & purification</topic><topic>ADN</topic><topic>Agronomy. Soil science and plant productions</topic><topic>AMPLIFICATION CHAINE POLYMERASE</topic><topic>Animal, plant and microbial ecology</topic><topic>ARN RIBOSOMAL</topic><topic>ARN RIBOSOMIAL</topic><topic>Bacteria</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Cellular biology</topic><topic>DATISCACEAE</topic><topic>DICOTILEDONEAS</topic><topic>DICOTYLEDONE</topic><topic>DIFERENCIAS BIOLOGICAS</topic><topic>DIFFERENCE BIOLOGIQUE</topic><topic>DNA Primers - genetics</topic><topic>DNA Probes - genetics</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Economic plant physiology</topic><topic>Flowers & plants</topic><topic>FRANKIA</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>GENE</topic><topic>GENES</topic><topic>Genes, Bacterial</topic><topic>Genetic Variation</topic><topic>Laboratorium voor Microbiologie</topic><topic>Microbial ecology</topic><topic>Microbiological Laboratory</topic><topic>Microbiologie</topic><topic>Microbiology</topic><topic>Microflora of plants</topic><topic>Molecular Sequence Data</topic><topic>Nitrogen Fixation</topic><topic>Plants - microbiology</topic><topic>Polymerase Chain Reaction</topic><topic>REACCION DE CADENAS DE POLIMERASA</topic><topic>Ribonucleic acid</topic><topic>RIBOSOMAS</topic><topic>RIBOSOME</topic><topic>RNA</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>SECUENCIA NUCLEICA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>SEQUENCE NUCLEIQUE</topic><topic>Soil Microbiology</topic><topic>Soils</topic><topic>Species Specificity</topic><topic>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mirza, M.S</creatorcontrib><creatorcontrib>Hameed, S</creatorcontrib><creatorcontrib>Akkermans, A.D.L</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>NARCIS:Publications</collection><jtitle>Applied and Environmental Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mirza, M.S</au><au>Hameed, S</au><au>Akkermans, A.D.L</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>1994-07-01</date><risdate>1994</risdate><volume>60</volume><issue>7</issue><spage>2371</spage><epage>2376</epage><pages>2371-2376</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>The presence of Frankia strains in soil samples collected from northern areas of Pakistan was detected by inoculating Coriaria nepalensis and Datisca cannabina plants. The abundance of compatible Frankia strains in some areas was indicated by profuse nodulation of the host plants, whereas soil samples from other localities failed to result in nodulation. An oligonucleotide probe (COR/DAT) directed against the 16S rRNA gene of the endophytes of Coriaria and Datisca spp. that did not cross-react with the RNA gene of Frankia strains isolated from other hosts was developed. Genetic diversity among Frankia strains nodulating D. cannabina was determined by sequence analysis of the partial 16S rRNA gene amplified from nodules induced by soil samples from different localities by PCR. Four types of Frankia sequences and one non-Frankia sequence were detected by hybridization with a Frankia genus probe and the COR/DAT probe as well as by sequence analysis of the cloned PCR products</abstract><cop>Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>7521157</pmid><doi>10.1128/aem.60.7.2371-2376.1994</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0099-2240 |
| ispartof | Applied and Environmental Microbiology, 1994-07, Vol.60 (7), p.2371-2376 |
| issn | 0099-2240 1098-5336 |
| language | eng |
| recordid | cdi_fao_agris_US9506301 |
| source | American Society for Microbiology; PubMed Central |
| subjects | Actinomycetales - genetics Actinomycetales - isolation & purification ADN Agronomy. Soil science and plant productions AMPLIFICATION CHAINE POLYMERASE Animal, plant and microbial ecology ARN RIBOSOMAL ARN RIBOSOMIAL Bacteria Base Sequence Biological and medical sciences Cellular biology DATISCACEAE DICOTILEDONEAS DICOTYLEDONE DIFERENCIAS BIOLOGICAS DIFFERENCE BIOLOGIQUE DNA Primers - genetics DNA Probes - genetics DNA, Bacterial - genetics DNA, Ribosomal - genetics Economic plant physiology Flowers & plants FRANKIA Fundamental and applied biological sciences. Psychology GENE GENES Genes, Bacterial Genetic Variation Laboratorium voor Microbiologie Microbial ecology Microbiological Laboratory Microbiologie Microbiology Microflora of plants Molecular Sequence Data Nitrogen Fixation Plants - microbiology Polymerase Chain Reaction REACCION DE CADENAS DE POLIMERASA Ribonucleic acid RIBOSOMAS RIBOSOME RNA RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics SECUENCIA NUCLEICA Sequence Homology, Nucleic Acid SEQUENCE NUCLEIQUE Soil Microbiology Soils Species Specificity Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) |
| title | Genetic diversity of Datisca cannabina-compatible Frankia strains as determined by sequence analysis of the PCR-amplified 16S rRNA gene |
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