Comparison of community structures between particle-associated and free-living prokaryotes in tropical and subtropical Pacific Ocean surface waters

• Published in: Journal of oceanography 2017-06, Vol.73 (3), p.383-395
• Main Authors: Suzuki, Shotaro, Kaneko, Ryo, Kodama, Taketoshi, Hashihama, Fuminori, Suwa, Shuhei, Tanita, Iwao, Furuya, Ken, Hamasaki, Koji
• Format: Article
• Language: English
• Subjects: Analytical methods; Bacteria; Chemical analysis; Cloning; Communities; Earth and Environmental Science; Earth Sciences; Electrophoresis; Environmental factors; Equatorial regions; Freshwater & Marine Ecology; Gel electrophoresis; Gels; Gene sequencing; Microorganisms; Nucleic acids; Ocean surface; Oceanography; Organic matter; Original Article; Particulate organic matter; Phylogeny; Profiles; Prokaryotes; Ribonucleic acid; RNA; Seawater; Structures; Surface water; Temperature (air-sea); Tropical climate; Tropical environment; Tropical environments; Water analysis
• ISSN: 0916-8370; 1573-868X
• DOI: 10.1007/s10872-016-0410-0

The subtropical and tropical regions of the Pacific Ocean are less productive than other oceanic regions. Although particle association should be an important strategy for heterotrophic prokaryotes to survive in such environments, we have little information on particle-associated (PA) prokaryotes in these regions. The specific aim of this study was to determine bacterial and archaeal community structures in the PA assemblage in comparison to the free-living (FL) assemblage in the North Pacific Subtropical Gyre, the South Pacific Subtropical Gyre, and an eastern equatorial region of the Pacific Ocean. Community profiles and phylogenetic identities were obtained by denaturing gradient gel electrophoresis, 454-pyrosequencing, and cloning followed by Sanger sequencing of 16Sr RNA gene amplicons. The distribution patterns of some abundant groups in three regions and two lifestyles (PA and FL) are shown in this study. Also, the PA community structures of bacteria differed from the FL ones and exhibited higher diversity than the FL ones, while the archaeal community structures did not show significant differences between PA and FL assemblages. We found that specific phylotypes of Gammaproteobacteria and Flavobacteria were abundant in PA bacterial assemblages, suggesting that they prefer to attach and consume particulate organic matter. In summary, the surface seawater PA assemblages represent very different bacterial and archaeal community structures between three different oceanic regions, each of which had distinct PA and FL community structures. These results imply that environmental factors determine microbial community structures.