Biomineralization Abilities of Cupriavidus Strain and Bacillus subtilis Strains In Vitro Isolated from Speleothems, Rani Cave, Chhattisgarh, India

• Published in: Geomicrobiology journal 2017-10, Vol.34 (9), p.737-752
• Main Authors: Chalia, Swati, Baskar, Sushmitha, Minakshi, Prasad, Baskar, Ramanathan, Ranjan, Koushlesh
• Format: Article
• Language: English
• Subjects: Agar; Bacillus; Bacillus sp; Bacillus subtilis; Bacteria; biocalcification; Calcification; Calcite; cave geomicrobiology; Caves; Cell culture; Clusters; Culture media; Cupriavidus sp; Field emission microscopy; Microorganisms; Mineralization; Phylogenetics; Phylogeny; Precipitates; rRNA 16S; Scanning electron microscopy; Sheep; Shells; Strains (organisms); Thiosulfate
• ISSN: 0149-0451; 1521-0529
• DOI: 10.1080/01490451.2016.1257663

In vitro culture experiments using three bacterial strains CSJC1, CSJC2, and CSJC3 isolated from speleothems, Rani cave, Chhattisgarh, India, were studied to examine their biomineralization potential. These speleothems showed high microbial cell enumerations on nutrient agar and iron agar (9 × 10 4  CFU/g) followed by thiosulfate agar (7 × 10 4  CFU/g), and 60 diverse strains were isolated. The BLASTn sequence search of 16S rRNA sequences with the NCBI database to establish the identity of CSJC1, CSJC2, and CSJC3 strains yielded similarity scores of ≥99% with the respective organisms, and the strains were identified as CSJC1 - Bacillus sp., CSJC2 - Cupriavidus sp., CSJC3 - Bacillus sp. The phylogenetic analysis of CSJC2 strain suggests that it formed a separate major cluster with Cupriavidus sp. and Cupriavidus necator. The phylogenetic analysis of CSJC1 and CSJC3 strains revealed that it formed a major cluster with several strains of Bacillus sp. and Bacillus subtilis. The biominerals induced by Cupriavidus sp. CSJC2 strain imaged with an ultra high-resolution field emission scanning electron microscope (FE-SEM) were seen as calcified coccoid shells that transformed into calcified dumbbells. FE-SEM imaging of biominerals induced by B. subtilis CSJC1 and CSJC3 tested both on B4 media and sheep blood agar individually showed that the precipitates formed calcified dumbbells that were almost similar but not identical phenotypically, indicating that strain-specific morphologies and crystal formation is easier when Ca is present in the media. This is the first comprehensive report on the possible evidences about the role of Cupriavidus sp. in calcite precipitation isolated from speleothems in the Indian caves. These results allow us to postulate that the identified strains may have a role in the biogenic influences in mineral formations at Rani cave.