Build-A-FLAIR: Synthetic T2-FLAIR Contrast Generation through Physics Informed Deep Learning

Purpose: Magnetic resonance imaging (MRI) exams include multiple series with varying contrast and redundant information. For instance, T2-FLAIR contrast is based upon tissue T2 decay and the presence of water, also present in T2- and diffusion-weighted contrasts. T2-FLAIR contrast can be hypothetica...

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Bibliographic Details
Published in:arXiv.org 2019-01
Main Authors: Nencka, Andrew S, Klein, Andrew, Koch, Kevin M, McGarry, Sean D, LaViolette, Peter S, Paulson, Eric S, Mickevicius, Nikolai J, Muftuler, L Tugan, Swearingen, Brad, McCrea, Michael A
Format: Article
Language:English
Subjects:
Artificial neural networks
Brain
Deep learning
Diffusion
Image acquisition
Image contrast
Magnetic resonance imaging
Medical imaging
Neural networks
NMR
Nuclear magnetic resonance
Smoothness
Training
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Summary:Purpose: Magnetic resonance imaging (MRI) exams include multiple series with varying contrast and redundant information. For instance, T2-FLAIR contrast is based upon tissue T2 decay and the presence of water, also present in T2- and diffusion-weighted contrasts. T2-FLAIR contrast can be hypothetically modeled through deep learning models trained with diffusion- and T2-weighted acquisitions. Methods: Diffusion-, T2-, T2-FLAIR-, and T1-weighted brain images were acquired in 15 individuals. A convolutional neural network was developed to generate a T2-FLAIR image from other contrasts. Two datasets were withheld from training for validation. Results: Inputs with physical relationships to T2-FLAIR contrast most significantly impacted performance. The best model yielded results similar to acquired T2-FLAIR images, with a structural similarity index of 0.909, and reproduced pathology excluded from training. Synthetic images qualitatively exhibited lower noise and increased smoothness compared to acquired images. Conclusion: This suggests that with optimal inputs, deep learning based contrast generation performs well with creating synthetic T2-FLAIR images. Feature engineering on neural network inputs, based upon the physical basis of contrast, impacts the generation of synthetic contrast images. A larger, prospective clinical study is needed.
ISSN:2331-8422