Search for Conserved Secondary Structures of RNA

We suggest a new algorithm to search a given set of the RNA sequences for conserved secondary structures. The algorithm is based on alignment of the sequences for potential helical strands. This procedure can be used to search for new structured RNAs and new regulatory elements. It is efficient for...

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Published in:Molecular biology (New York) 2003-09, Vol.37 (5), p.723-732
Main Authors: Gorbunov, K Yu, Mironov, A A, Lyubetsky, V A
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Language:English
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Ribonucleic acid
RNA
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creator Gorbunov, K Yu
Mironov, A A
Lyubetsky, V A
description We suggest a new algorithm to search a given set of the RNA sequences for conserved secondary structures. The algorithm is based on alignment of the sequences for potential helical strands. This procedure can be used to search for new structured RNAs and new regulatory elements. It is efficient for the genome-scale analysis. The results of various tests run with this algorithm are shown.[PUBLICATION ABSTRACT]
doi_str_mv 10.1023/A:1026089011336
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subjects Ribonucleic acid
RNA
title Search for Conserved Secondary Structures of RNA
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