Use of genetic algorithms to select input variables in decision tree models for the prediction of benthic macroinvertebrates

• Published in: Ecological modelling 2003-02, Vol.160 (3), p.291-300
• Main Authors: D'heygere, Tom, Goethals, Peter L.M., De Pauw, Niels
• Format: Article
• Language: English
• Subjects: Animal, plant and microbial ecology; Benthic macroinvertebrates; Biological and medical sciences; Decision trees; Fundamental and applied biological sciences. Psychology; General aspects. Techniques; Genetic algorithm; Methods and techniques (sampling, tagging, trapping, modelling...); Physical–chemical-, ecotoxicological-, structural variables; Predictive models
• ISSN: 0304-3800; 1872-7026
• DOI: 10.1016/S0304-3800(02)00260-0

Predicting freshwater organisms based on machine learning is becoming more and more reliable due to the availability of appropriate datasets, advanced modelling techniques and the continuously increasing capacity of computers. A database consisting of measurements collected at 360 sampling sites in non-navigable watercourses in Flanders was applied to predict the absence/presence of benthic macroinvertebrate taxa by means of decision trees. The measured variables were a combination of physical–chemical (temperature, pH, dissolved oxygen concentration, conductivity, total organic carbon, Kjeldahl nitrogen and total phosphorus), structural (granulometric analysis of the sediment, width, depth and flow velocity of the river) and two ecotoxicological variables. The predictive power of decision trees was assessed on the basis of the number of Correctly Classified Instances (CCI). A genetic algorithm was introduced to compare the predictive power of different sets of input variables for the decision trees. The number of input variables was reduced from 15 to 2–8 variables without affecting the predictive power of the decision trees significantly. Furthermore, reducing the number of input variables allowed to ease the identification of general data trends.