Algivirga pacifica gen. nov., sp. nov., a Novel Agar-Degrading Marine Bacterium of the Family Flammeovirgaceae Isolated from Micronesia

An aerobic, Gram-negative, coccoid to short rod-shaped and non-flagellated marine bacterial strain S354ᵀ was isolated from seawater of Micronesia. The strain was capable to degrade agar-forming slight depression into agar plate. Growth occurred at a temperature range of 12–44 °C, a pH range of 5–9,...

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Published in:Current microbiology 2013-12, Vol.67 (6), p.742-747
Main Authors: Kim, Jennifer Jooyoun, Kim, Ji Hyung, Kwon, Young-Kyung, Kwon, Kae Kyoung, Yang, Sung-Hyun, Jang, Jiyi, Heo, Soo-Jin, Park, Heung-Sik, Jung, Won-Kyo, Lee, Youngdeuk, Kang, Do-Hyung, Oh, Chulhong
Format: Article
Language:English
Subjects:
Agar - metabolism
Bacteria
Bacterial Typing Techniques
Bacteroidetes - classification
Bacteroidetes - genetics
Bacteroidetes - isolation & purification
Bacteroidetes - metabolism
Base Composition
Biodegradation
Biomedical and Life Sciences
Biotechnology
Chemical analysis
Cluster Analysis
DNA
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
fatty acids
Fatty Acids - analysis
glycolipids
Hydrogen-Ion Concentration
Life Sciences
Microbiology
Micronesia
Microscopy, Electron, Scanning
Molecular Sequence Data
nucleotide sequences
Phospholipids - analysis
Phylogenetics
Phylogeny
Quinones - analysis
ribosomal RNA
RNA, Ribosomal, 16S - genetics
salinity
Seawater
Seawater - microbiology
Sequence Analysis, DNA
Sodium chloride
Sodium Chloride - metabolism
Temperature
Water analysis
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cited_by cdi_FETCH-LOGICAL-c429t-9d605771ae99375377ae6e4d7958882ad2e5aa8d758392ffb21d542d7162dbed3
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container_title Current microbiology
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creator Kim, Jennifer Jooyoun
Kim, Ji Hyung
Kwon, Young-Kyung
Kwon, Kae Kyoung
Yang, Sung-Hyun
Jang, Jiyi
Heo, Soo-Jin
Park, Heung-Sik
Jung, Won-Kyo
Lee, Youngdeuk
Kang, Do-Hyung
Oh, Chulhong
description An aerobic, Gram-negative, coccoid to short rod-shaped and non-flagellated marine bacterial strain S354ᵀ was isolated from seawater of Micronesia. The strain was capable to degrade agar-forming slight depression into agar plate. Growth occurred at a temperature range of 12–44 °C, a pH range of 5–9, and a salinity range of 1–7 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences suggested that S354ᵀ belongs to the family Flammeovirgaceae. The novel strain was most closely related to Limibacter armeniacum YM 11-185ᵀ with similarity of 92.5 %. The DNA G+C content was 43.8 mol%. The major fatty acids (>10 %) were iso-C₁₅:₀ and C₁₆:₁ ω5c. The predominant isoprenoid quinone was determined to be MK-7. Polar lipid profile of S354ᵀ consisted of phosphatidylethanolamine, unknown polar lipid, and unknown glycolipids. Based on the phenotypic, phylogenetic, biochemical, and physiological tests conducted in this study, S354ᵀ is proposed to represent a type strain of a novel genus and species. The 16S rRNA gene sequence of S354ᵀ is registered in GenBank under the accession number JQ639084. The type of strain Algivirga pacifica gen. nov., sp. nov. is S354ᵀ (=KCCM 90107ᵀ=JCM 18326ᵀ).
doi_str_mv 10.1007/s00284-013-0429-z
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The type of strain Algivirga pacifica gen. nov., sp. nov. is S354ᵀ (=KCCM 90107ᵀ=JCM 18326ᵀ).</description><subject>Agar - metabolism</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - genetics</subject><subject>Bacteroidetes - isolation &amp; purification</subject><subject>Bacteroidetes - metabolism</subject><subject>Base Composition</subject><subject>Biodegradation</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chemical analysis</subject><subject>Cluster Analysis</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>glycolipids</subject><subject>Hydrogen-Ion Concentration</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Micronesia</subject><subject>Microscopy, Electron, Scanning</subject><subject>Molecular Sequence Data</subject><subject>nucleotide sequences</subject><subject>Phospholipids - analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Quinones - analysis</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>salinity</subject><subject>Seawater</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium chloride</subject><subject>Sodium Chloride - metabolism</subject><subject>Temperature</subject><subject>Water analysis</subject><issn>0343-8651</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNqNks1u1DAUhS0EokPhAdiAJTYsmsF_ie3lUDpQqYUFdG3diW-CqyQe7MlI7Qvw2mSaFiEWiNW1dL9zro6OCXnJ2ZIzpt9lxoRRBeOyYErY4vYRWXAlRcGs5Y_JgkklC1OV_Ig8y_maMS4s40_JkZCWaWXFgvxcdW3Yh9QC3UIdmlADbXFY0iHulyc0bx9eQD_HPXZ01UIqPmCbwIehpZeQwoD0PdQ7TGHsaWzo7jvSNfShu6HrDvoe492BGgHpeY4d7NDTJsWeXoY6xQFzgOfkSQNdxhf385hcrc--nX4qLr58PD9dXRT1FHBXWF-xUmsOaK3UpdQasELltS2NMQK8wBLAeF0aaUXTbAT3pRJe80r4DXp5TN7OvtsUf4yYd64PucaugwHjmB1XlZHacmP_A1XSWlOqA_rmL_Q6jmmYgtxRouJWyIniMzWFzjlh47Yp9JBuHGfuUKibC3VToe5QqLudNK_uncdNj_634qHBCRAzkKfV0GL64_Q_XF_PogaigzaF7K6-CsYVY6ycPo-VvwARy7NE</recordid><startdate>20131201</startdate><enddate>20131201</enddate><creator>Kim, Jennifer Jooyoun</creator><creator>Kim, Ji Hyung</creator><creator>Kwon, Young-Kyung</creator><creator>Kwon, Kae Kyoung</creator><creator>Yang, Sung-Hyun</creator><creator>Jang, Jiyi</creator><creator>Heo, Soo-Jin</creator><creator>Park, Heung-Sik</creator><creator>Jung, Won-Kyo</creator><creator>Lee, Youngdeuk</creator><creator>Kang, Do-Hyung</creator><creator>Oh, Chulhong</creator><general>Springer-Verlag</general><general>Springer US</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>F1W</scope><scope>H95</scope><scope>H97</scope><scope>H98</scope><scope>L.G</scope></search><sort><creationdate>20131201</creationdate><title>Algivirga pacifica gen. nov., sp. nov., a Novel Agar-Degrading Marine Bacterium of the Family Flammeovirgaceae Isolated from Micronesia</title><author>Kim, Jennifer Jooyoun ; Kim, Ji Hyung ; Kwon, Young-Kyung ; Kwon, Kae Kyoung ; Yang, Sung-Hyun ; Jang, Jiyi ; Heo, Soo-Jin ; Park, Heung-Sik ; Jung, Won-Kyo ; Lee, Youngdeuk ; Kang, Do-Hyung ; Oh, Chulhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-9d605771ae99375377ae6e4d7958882ad2e5aa8d758392ffb21d542d7162dbed3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Agar - metabolism</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - genetics</topic><topic>Bacteroidetes - isolation &amp; purification</topic><topic>Bacteroidetes - metabolism</topic><topic>Base Composition</topic><topic>Biodegradation</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chemical analysis</topic><topic>Cluster Analysis</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>glycolipids</topic><topic>Hydrogen-Ion Concentration</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>Micronesia</topic><topic>Microscopy, Electron, Scanning</topic><topic>Molecular Sequence Data</topic><topic>nucleotide sequences</topic><topic>Phospholipids - analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Quinones - analysis</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>salinity</topic><topic>Seawater</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium chloride</topic><topic>Sodium Chloride - metabolism</topic><topic>Temperature</topic><topic>Water analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Jennifer Jooyoun</creatorcontrib><creatorcontrib>Kim, Ji Hyung</creatorcontrib><creatorcontrib>Kwon, Young-Kyung</creatorcontrib><creatorcontrib>Kwon, Kae Kyoung</creatorcontrib><creatorcontrib>Yang, Sung-Hyun</creatorcontrib><creatorcontrib>Jang, Jiyi</creatorcontrib><creatorcontrib>Heo, Soo-Jin</creatorcontrib><creatorcontrib>Park, Heung-Sik</creatorcontrib><creatorcontrib>Jung, Won-Kyo</creatorcontrib><creatorcontrib>Lee, Youngdeuk</creatorcontrib><creatorcontrib>Kang, Do-Hyung</creatorcontrib><creatorcontrib>Oh, Chulhong</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health Medical collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; 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The strain was capable to degrade agar-forming slight depression into agar plate. Growth occurred at a temperature range of 12–44 °C, a pH range of 5–9, and a salinity range of 1–7 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences suggested that S354ᵀ belongs to the family Flammeovirgaceae. The novel strain was most closely related to Limibacter armeniacum YM 11-185ᵀ with similarity of 92.5 %. The DNA G+C content was 43.8 mol%. The major fatty acids (&gt;10 %) were iso-C₁₅:₀ and C₁₆:₁ ω5c. The predominant isoprenoid quinone was determined to be MK-7. Polar lipid profile of S354ᵀ consisted of phosphatidylethanolamine, unknown polar lipid, and unknown glycolipids. Based on the phenotypic, phylogenetic, biochemical, and physiological tests conducted in this study, S354ᵀ is proposed to represent a type strain of a novel genus and species. The 16S rRNA gene sequence of S354ᵀ is registered in GenBank under the accession number JQ639084. 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identifier ISSN: 0343-8651
ispartof Current microbiology, 2013-12, Vol.67 (6), p.742-747
issn 0343-8651
1432-0991
language eng
recordid cdi_proquest_miscellaneous_1468379189
source Springer Nature
subjects Agar - metabolism
Bacteria
Bacterial Typing Techniques
Bacteroidetes - classification
Bacteroidetes - genetics
Bacteroidetes - isolation & purification
Bacteroidetes - metabolism
Base Composition
Biodegradation
Biomedical and Life Sciences
Biotechnology
Chemical analysis
Cluster Analysis
DNA
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
fatty acids
Fatty Acids - analysis
glycolipids
Hydrogen-Ion Concentration
Life Sciences
Microbiology
Micronesia
Microscopy, Electron, Scanning
Molecular Sequence Data
nucleotide sequences
Phospholipids - analysis
Phylogenetics
Phylogeny
Quinones - analysis
ribosomal RNA
RNA, Ribosomal, 16S - genetics
salinity
Seawater
Seawater - microbiology
Sequence Analysis, DNA
Sodium chloride
Sodium Chloride - metabolism
Temperature
Water analysis
title Algivirga pacifica gen. nov., sp. nov., a Novel Agar-Degrading Marine Bacterium of the Family Flammeovirgaceae Isolated from Micronesia
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-21T12%3A32%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Algivirga%20pacifica%20gen.%20nov.,%20sp.%20nov.,%20a%20Novel%20Agar-Degrading%20Marine%20Bacterium%20of%20the%20Family%20Flammeovirgaceae%20Isolated%20from%20Micronesia&rft.jtitle=Current%20microbiology&rft.au=Kim,%20Jennifer%20Jooyoun&rft.date=2013-12-01&rft.volume=67&rft.issue=6&rft.spage=742&rft.epage=747&rft.pages=742-747&rft.issn=0343-8651&rft.eissn=1432-0991&rft_id=info:doi/10.1007/s00284-013-0429-z&rft_dat=%3Cproquest_cross%3E1468379189%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c429t-9d605771ae99375377ae6e4d7958882ad2e5aa8d758392ffb21d542d7162dbed3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1443261923&rft_id=info:pmid/23907492&rfr_iscdi=true