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Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems
The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a...
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Published in: | Applied and Environmental Microbiology 1995-02, Vol.61 (2), p.788-792 |
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description | The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated. |
doi_str_mv | 10.1128/aem.61.2.788-792.1995 |
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H ; DE VOS, W. M</creator><creatorcontrib>KLIJN, N ; WEERKAMP, A. H ; DE VOS, W. M ; Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost ; NIZO, Ede, The Netherlands</creatorcontrib><description>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/aem.61.2.788-792.1995</identifier><identifier>PMID: 7574616</identifier><identifier>CODEN: AEMIDF</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>adn ; agricultural soils ; aguas residuales ; amplification chaine polymerase ; Animals ; Bacteria ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Biology of microorganisms of confirmed or potential industrial interest ; Biotechnology ; bovin laitier ; Cattle ; cheese ; Cheese - microbiology ; cheesemaking ; cultivos iniciadores ; culture starter ; cultured milk ; dairy cattle ; dairy industry ; Dairy products ; Dairying ; dechet industriel ; desechos industriales ; dna ; DNA Primers - genetics ; DNA, Bacterial - genetics ; eau usee ; Ecosystem ; Ecosystems ; ensilado ; ensilage produit ; enzimas ; enzyme ; enzymes ; exploitation agricole ; explotaciones agrarias ; fabricacion del queso ; farms ; fromage ; Fundamental and applied biological sciences. Psychology ; ganado de leche ; gene ; genes ; industria lechera ; industrial wastes ; industrie laitiere ; Isolation and description ; lactococcus ; Lactococcus - genetics ; Lactococcus - isolation & purification ; Lactococcus - metabolism ; Lactococcus lactis ; Lactose - metabolism ; lactoserum ; lait ; lait fermente ; leche ; leche fermentada ; milk ; Mission oriented research ; Molecular Sequence Data ; nisin ; nisina ; nysine ; peau ; piel animal ; Polymerase Chain Reaction ; proteasas ; protease ; proteases ; queso ; reaccion de cadenas de polimerasa ; Ribonucleic acid ; ribosomas ; ribosome ; ribosomes ; RNA ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; saliva ; salive ; Sequence Homology, Nucleic Acid ; silage ; skin ; sol agricole ; Species Specificity ; starter cultures ; suelos agricolas ; suero de la leche ; technologie fromagere ; wastewater ; whey</subject><ispartof>Applied and Environmental Microbiology, 1995-02, Vol.61 (2), p.788-792</ispartof><rights>1995 INIST-CNRS</rights><rights>Copyright American Society for Microbiology Feb 1995</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c658t-c0f34b8a4fcb5b5b17213d6c98a7e954c9afd4e6b85285e2d028a44f5872d1df3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC167339/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC167339/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3186,3187,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=3425323$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/7574616$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>KLIJN, N</creatorcontrib><creatorcontrib>WEERKAMP, A. H</creatorcontrib><creatorcontrib>DE VOS, W. M</creatorcontrib><creatorcontrib>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</creatorcontrib><creatorcontrib>NIZO, Ede, The Netherlands</creatorcontrib><title>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</description><subject>adn</subject><subject>agricultural soils</subject><subject>aguas residuales</subject><subject>amplification chaine polymerase</subject><subject>Animals</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biology of microorganisms of confirmed or potential industrial interest</subject><subject>Biotechnology</subject><subject>bovin laitier</subject><subject>Cattle</subject><subject>cheese</subject><subject>Cheese - microbiology</subject><subject>cheesemaking</subject><subject>cultivos iniciadores</subject><subject>culture starter</subject><subject>cultured milk</subject><subject>dairy cattle</subject><subject>dairy industry</subject><subject>Dairy products</subject><subject>Dairying</subject><subject>dechet industriel</subject><subject>desechos industriales</subject><subject>dna</subject><subject>DNA Primers - genetics</subject><subject>DNA, Bacterial - genetics</subject><subject>eau usee</subject><subject>Ecosystem</subject><subject>Ecosystems</subject><subject>ensilado</subject><subject>ensilage produit</subject><subject>enzimas</subject><subject>enzyme</subject><subject>enzymes</subject><subject>exploitation agricole</subject><subject>explotaciones agrarias</subject><subject>fabricacion del queso</subject><subject>farms</subject><subject>fromage</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>ganado de leche</subject><subject>gene</subject><subject>genes</subject><subject>industria lechera</subject><subject>industrial wastes</subject><subject>industrie laitiere</subject><subject>Isolation and description</subject><subject>lactococcus</subject><subject>Lactococcus - genetics</subject><subject>Lactococcus - isolation & purification</subject><subject>Lactococcus - metabolism</subject><subject>Lactococcus lactis</subject><subject>Lactose - metabolism</subject><subject>lactoserum</subject><subject>lait</subject><subject>lait fermente</subject><subject>leche</subject><subject>leche fermentada</subject><subject>milk</subject><subject>Mission oriented research</subject><subject>Molecular Sequence Data</subject><subject>nisin</subject><subject>nisina</subject><subject>nysine</subject><subject>peau</subject><subject>piel animal</subject><subject>Polymerase Chain Reaction</subject><subject>proteasas</subject><subject>protease</subject><subject>proteases</subject><subject>queso</subject><subject>reaccion de cadenas de polimerasa</subject><subject>Ribonucleic acid</subject><subject>ribosomas</subject><subject>ribosome</subject><subject>ribosomes</subject><subject>RNA</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>saliva</subject><subject>salive</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>silage</subject><subject>skin</subject><subject>sol agricole</subject><subject>Species Specificity</subject><subject>starter cultures</subject><subject>suelos agricolas</subject><subject>suero de la leche</subject><subject>technologie fromagere</subject><subject>wastewater</subject><subject>whey</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1995</creationdate><recordtype>article</recordtype><recordid>eNqFkUuLFDEUhYMoYzv6E0YKEXdV5v1YuJDxCQMudDZuwu1UqjtDVdImVcrMrzdtN43jRrII3Pude09yELoguCOE6tfgp06SjnZK61YZ2hFjxAO0ItjoVjAmH6IVxsa0lHL8GD0p5QZjzLHUZ-hMCcUlkSv0_Z2fvZtDig3EvnFbyOBmn8Md_CmmoRlrIRXfLnMYw12Im-ZqX3HJuaU0ZbfrmhCbCPOSYWy8S-W2zH4qT9GjAcbinx3vc3T94f23y0_t1ZePny_fXrVOCj23Dg-MrzXwwa1FPURRwnrpjAbljeDOwNBzL9daUC087TGtMB-EVrQn_cDO0ZvD3N2ynnzvfJyrEbvLYYJ8axMEe78Tw9Zu0k9LpGLMVP2roz6nH4svs51CcX4cIfq0FKuU0NUS_y9Y5xFusKjgi3_Am7TkWD_BUiwMI5LKCokD5HIqJfvh5Jhgu0_Y1oStJJbamrCtCdt9wlV38fdzT6pjpLX_8tiH4mAcMkQXygljnApGWcWaA7YNm-2vkL2FMt1bWZHnB2SAZGGT65Trr3sPmEhuKvAb5m7Few</recordid><startdate>19950201</startdate><enddate>19950201</enddate><creator>KLIJN, N</creator><creator>WEERKAMP, A. H</creator><creator>DE VOS, W. M</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19950201</creationdate><title>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</title><author>KLIJN, N ; WEERKAMP, A. H ; DE VOS, W. M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c658t-c0f34b8a4fcb5b5b17213d6c98a7e954c9afd4e6b85285e2d028a44f5872d1df3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1995</creationdate><topic>adn</topic><topic>agricultural soils</topic><topic>aguas residuales</topic><topic>amplification chaine polymerase</topic><topic>Animals</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biology of microorganisms of confirmed or potential industrial interest</topic><topic>Biotechnology</topic><topic>bovin laitier</topic><topic>Cattle</topic><topic>cheese</topic><topic>Cheese - microbiology</topic><topic>cheesemaking</topic><topic>cultivos iniciadores</topic><topic>culture starter</topic><topic>cultured milk</topic><topic>dairy cattle</topic><topic>dairy industry</topic><topic>Dairy products</topic><topic>Dairying</topic><topic>dechet industriel</topic><topic>desechos industriales</topic><topic>dna</topic><topic>DNA Primers - genetics</topic><topic>DNA, Bacterial - genetics</topic><topic>eau usee</topic><topic>Ecosystem</topic><topic>Ecosystems</topic><topic>ensilado</topic><topic>ensilage produit</topic><topic>enzimas</topic><topic>enzyme</topic><topic>enzymes</topic><topic>exploitation agricole</topic><topic>explotaciones agrarias</topic><topic>fabricacion del queso</topic><topic>farms</topic><topic>fromage</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>ganado de leche</topic><topic>gene</topic><topic>genes</topic><topic>industria lechera</topic><topic>industrial wastes</topic><topic>industrie laitiere</topic><topic>Isolation and description</topic><topic>lactococcus</topic><topic>Lactococcus - genetics</topic><topic>Lactococcus - isolation & purification</topic><topic>Lactococcus - metabolism</topic><topic>Lactococcus lactis</topic><topic>Lactose - metabolism</topic><topic>lactoserum</topic><topic>lait</topic><topic>lait fermente</topic><topic>leche</topic><topic>leche fermentada</topic><topic>milk</topic><topic>Mission oriented research</topic><topic>Molecular Sequence Data</topic><topic>nisin</topic><topic>nisina</topic><topic>nysine</topic><topic>peau</topic><topic>piel animal</topic><topic>Polymerase Chain Reaction</topic><topic>proteasas</topic><topic>protease</topic><topic>proteases</topic><topic>queso</topic><topic>reaccion de cadenas de polimerasa</topic><topic>Ribonucleic acid</topic><topic>ribosomas</topic><topic>ribosome</topic><topic>ribosomes</topic><topic>RNA</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>saliva</topic><topic>salive</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>silage</topic><topic>skin</topic><topic>sol agricole</topic><topic>Species Specificity</topic><topic>starter cultures</topic><topic>suelos agricolas</topic><topic>suero de la leche</topic><topic>technologie fromagere</topic><topic>wastewater</topic><topic>whey</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>KLIJN, N</creatorcontrib><creatorcontrib>WEERKAMP, A. H</creatorcontrib><creatorcontrib>DE VOS, W. M</creatorcontrib><creatorcontrib>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</creatorcontrib><creatorcontrib>NIZO, Ede, The Netherlands</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied and Environmental Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>KLIJN, N</au><au>WEERKAMP, A. H</au><au>DE VOS, W. M</au><aucorp>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</aucorp><aucorp>NIZO, Ede, The Netherlands</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>1995-02-01</date><risdate>1995</risdate><volume>61</volume><issue>2</issue><spage>788</spage><epage>792</epage><pages>788-792</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</abstract><cop>Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>7574616</pmid><doi>10.1128/aem.61.2.788-792.1995</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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source | PubMed Central (Open Access); ASM_美国微生物学会期刊 |
subjects | adn agricultural soils aguas residuales amplification chaine polymerase Animals Bacteria Bacteriology Base Sequence Biological and medical sciences Biology of microorganisms of confirmed or potential industrial interest Biotechnology bovin laitier Cattle cheese Cheese - microbiology cheesemaking cultivos iniciadores culture starter cultured milk dairy cattle dairy industry Dairy products Dairying dechet industriel desechos industriales dna DNA Primers - genetics DNA, Bacterial - genetics eau usee Ecosystem Ecosystems ensilado ensilage produit enzimas enzyme enzymes exploitation agricole explotaciones agrarias fabricacion del queso farms fromage Fundamental and applied biological sciences. Psychology ganado de leche gene genes industria lechera industrial wastes industrie laitiere Isolation and description lactococcus Lactococcus - genetics Lactococcus - isolation & purification Lactococcus - metabolism Lactococcus lactis Lactose - metabolism lactoserum lait lait fermente leche leche fermentada milk Mission oriented research Molecular Sequence Data nisin nisina nysine peau piel animal Polymerase Chain Reaction proteasas protease proteases queso reaccion de cadenas de polimerasa Ribonucleic acid ribosomas ribosome ribosomes RNA RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics saliva salive Sequence Homology, Nucleic Acid silage skin sol agricole Species Specificity starter cultures suelos agricolas suero de la leche technologie fromagere wastewater whey |
title | Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems |
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