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Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems

The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a...

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Published in:Applied and Environmental Microbiology 1995-02, Vol.61 (2), p.788-792
Main Authors: KLIJN, N, WEERKAMP, A. H, DE VOS, W. M
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DE VOS, W. M
description The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.
doi_str_mv 10.1128/aem.61.2.788-792.1995
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H ; DE VOS, W. M</creator><creatorcontrib>KLIJN, N ; WEERKAMP, A. H ; DE VOS, W. M ; Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost ; NIZO, Ede, The Netherlands</creatorcontrib><description>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/aem.61.2.788-792.1995</identifier><identifier>PMID: 7574616</identifier><identifier>CODEN: AEMIDF</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>adn ; agricultural soils ; aguas residuales ; amplification chaine polymerase ; Animals ; Bacteria ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Biology of microorganisms of confirmed or potential industrial interest ; Biotechnology ; bovin laitier ; Cattle ; cheese ; Cheese - microbiology ; cheesemaking ; cultivos iniciadores ; culture starter ; cultured milk ; dairy cattle ; dairy industry ; Dairy products ; Dairying ; dechet industriel ; desechos industriales ; dna ; DNA Primers - genetics ; DNA, Bacterial - genetics ; eau usee ; Ecosystem ; Ecosystems ; ensilado ; ensilage produit ; enzimas ; enzyme ; enzymes ; exploitation agricole ; explotaciones agrarias ; fabricacion del queso ; farms ; fromage ; Fundamental and applied biological sciences. Psychology ; ganado de leche ; gene ; genes ; industria lechera ; industrial wastes ; industrie laitiere ; Isolation and description ; lactococcus ; Lactococcus - genetics ; Lactococcus - isolation &amp; purification ; Lactococcus - metabolism ; Lactococcus lactis ; Lactose - metabolism ; lactoserum ; lait ; lait fermente ; leche ; leche fermentada ; milk ; Mission oriented research ; Molecular Sequence Data ; nisin ; nisina ; nysine ; peau ; piel animal ; Polymerase Chain Reaction ; proteasas ; protease ; proteases ; queso ; reaccion de cadenas de polimerasa ; Ribonucleic acid ; ribosomas ; ribosome ; ribosomes ; RNA ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; saliva ; salive ; Sequence Homology, Nucleic Acid ; silage ; skin ; sol agricole ; Species Specificity ; starter cultures ; suelos agricolas ; suero de la leche ; technologie fromagere ; wastewater ; whey</subject><ispartof>Applied and Environmental Microbiology, 1995-02, Vol.61 (2), p.788-792</ispartof><rights>1995 INIST-CNRS</rights><rights>Copyright American Society for Microbiology Feb 1995</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c658t-c0f34b8a4fcb5b5b17213d6c98a7e954c9afd4e6b85285e2d028a44f5872d1df3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC167339/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC167339/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3186,3187,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=3425323$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/7574616$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>KLIJN, N</creatorcontrib><creatorcontrib>WEERKAMP, A. H</creatorcontrib><creatorcontrib>DE VOS, W. M</creatorcontrib><creatorcontrib>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</creatorcontrib><creatorcontrib>NIZO, Ede, The Netherlands</creatorcontrib><title>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</description><subject>adn</subject><subject>agricultural soils</subject><subject>aguas residuales</subject><subject>amplification chaine polymerase</subject><subject>Animals</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biology of microorganisms of confirmed or potential industrial interest</subject><subject>Biotechnology</subject><subject>bovin laitier</subject><subject>Cattle</subject><subject>cheese</subject><subject>Cheese - microbiology</subject><subject>cheesemaking</subject><subject>cultivos iniciadores</subject><subject>culture starter</subject><subject>cultured milk</subject><subject>dairy cattle</subject><subject>dairy industry</subject><subject>Dairy products</subject><subject>Dairying</subject><subject>dechet industriel</subject><subject>desechos industriales</subject><subject>dna</subject><subject>DNA Primers - genetics</subject><subject>DNA, Bacterial - genetics</subject><subject>eau usee</subject><subject>Ecosystem</subject><subject>Ecosystems</subject><subject>ensilado</subject><subject>ensilage produit</subject><subject>enzimas</subject><subject>enzyme</subject><subject>enzymes</subject><subject>exploitation agricole</subject><subject>explotaciones agrarias</subject><subject>fabricacion del queso</subject><subject>farms</subject><subject>fromage</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>ganado de leche</subject><subject>gene</subject><subject>genes</subject><subject>industria lechera</subject><subject>industrial wastes</subject><subject>industrie laitiere</subject><subject>Isolation and description</subject><subject>lactococcus</subject><subject>Lactococcus - genetics</subject><subject>Lactococcus - isolation &amp; purification</subject><subject>Lactococcus - metabolism</subject><subject>Lactococcus lactis</subject><subject>Lactose - metabolism</subject><subject>lactoserum</subject><subject>lait</subject><subject>lait fermente</subject><subject>leche</subject><subject>leche fermentada</subject><subject>milk</subject><subject>Mission oriented research</subject><subject>Molecular Sequence Data</subject><subject>nisin</subject><subject>nisina</subject><subject>nysine</subject><subject>peau</subject><subject>piel animal</subject><subject>Polymerase Chain Reaction</subject><subject>proteasas</subject><subject>protease</subject><subject>proteases</subject><subject>queso</subject><subject>reaccion de cadenas de polimerasa</subject><subject>Ribonucleic acid</subject><subject>ribosomas</subject><subject>ribosome</subject><subject>ribosomes</subject><subject>RNA</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>saliva</subject><subject>salive</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>silage</subject><subject>skin</subject><subject>sol agricole</subject><subject>Species Specificity</subject><subject>starter cultures</subject><subject>suelos agricolas</subject><subject>suero de la leche</subject><subject>technologie fromagere</subject><subject>wastewater</subject><subject>whey</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1995</creationdate><recordtype>article</recordtype><recordid>eNqFkUuLFDEUhYMoYzv6E0YKEXdV5v1YuJDxCQMudDZuwu1UqjtDVdImVcrMrzdtN43jRrII3Pude09yELoguCOE6tfgp06SjnZK61YZ2hFjxAO0ItjoVjAmH6IVxsa0lHL8GD0p5QZjzLHUZ-hMCcUlkSv0_Z2fvZtDig3EvnFbyOBmn8Md_CmmoRlrIRXfLnMYw12Im-ZqX3HJuaU0ZbfrmhCbCPOSYWy8S-W2zH4qT9GjAcbinx3vc3T94f23y0_t1ZePny_fXrVOCj23Dg-MrzXwwa1FPURRwnrpjAbljeDOwNBzL9daUC087TGtMB-EVrQn_cDO0ZvD3N2ynnzvfJyrEbvLYYJ8axMEe78Tw9Zu0k9LpGLMVP2roz6nH4svs51CcX4cIfq0FKuU0NUS_y9Y5xFusKjgi3_Am7TkWD_BUiwMI5LKCokD5HIqJfvh5Jhgu0_Y1oStJJbamrCtCdt9wlV38fdzT6pjpLX_8tiH4mAcMkQXygljnApGWcWaA7YNm-2vkL2FMt1bWZHnB2SAZGGT65Trr3sPmEhuKvAb5m7Few</recordid><startdate>19950201</startdate><enddate>19950201</enddate><creator>KLIJN, N</creator><creator>WEERKAMP, A. H</creator><creator>DE VOS, W. M</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19950201</creationdate><title>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</title><author>KLIJN, N ; WEERKAMP, A. H ; DE VOS, W. M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c658t-c0f34b8a4fcb5b5b17213d6c98a7e954c9afd4e6b85285e2d028a44f5872d1df3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1995</creationdate><topic>adn</topic><topic>agricultural soils</topic><topic>aguas residuales</topic><topic>amplification chaine polymerase</topic><topic>Animals</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biology of microorganisms of confirmed or potential industrial interest</topic><topic>Biotechnology</topic><topic>bovin laitier</topic><topic>Cattle</topic><topic>cheese</topic><topic>Cheese - microbiology</topic><topic>cheesemaking</topic><topic>cultivos iniciadores</topic><topic>culture starter</topic><topic>cultured milk</topic><topic>dairy cattle</topic><topic>dairy industry</topic><topic>Dairy products</topic><topic>Dairying</topic><topic>dechet industriel</topic><topic>desechos industriales</topic><topic>dna</topic><topic>DNA Primers - genetics</topic><topic>DNA, Bacterial - genetics</topic><topic>eau usee</topic><topic>Ecosystem</topic><topic>Ecosystems</topic><topic>ensilado</topic><topic>ensilage produit</topic><topic>enzimas</topic><topic>enzyme</topic><topic>enzymes</topic><topic>exploitation agricole</topic><topic>explotaciones agrarias</topic><topic>fabricacion del queso</topic><topic>farms</topic><topic>fromage</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>ganado de leche</topic><topic>gene</topic><topic>genes</topic><topic>industria lechera</topic><topic>industrial wastes</topic><topic>industrie laitiere</topic><topic>Isolation and description</topic><topic>lactococcus</topic><topic>Lactococcus - genetics</topic><topic>Lactococcus - isolation &amp; purification</topic><topic>Lactococcus - metabolism</topic><topic>Lactococcus lactis</topic><topic>Lactose - metabolism</topic><topic>lactoserum</topic><topic>lait</topic><topic>lait fermente</topic><topic>leche</topic><topic>leche fermentada</topic><topic>milk</topic><topic>Mission oriented research</topic><topic>Molecular Sequence Data</topic><topic>nisin</topic><topic>nisina</topic><topic>nysine</topic><topic>peau</topic><topic>piel animal</topic><topic>Polymerase Chain Reaction</topic><topic>proteasas</topic><topic>protease</topic><topic>proteases</topic><topic>queso</topic><topic>reaccion de cadenas de polimerasa</topic><topic>Ribonucleic acid</topic><topic>ribosomas</topic><topic>ribosome</topic><topic>ribosomes</topic><topic>RNA</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>saliva</topic><topic>salive</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>silage</topic><topic>skin</topic><topic>sol agricole</topic><topic>Species Specificity</topic><topic>starter cultures</topic><topic>suelos agricolas</topic><topic>suero de la leche</topic><topic>technologie fromagere</topic><topic>wastewater</topic><topic>whey</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>KLIJN, N</creatorcontrib><creatorcontrib>WEERKAMP, A. H</creatorcontrib><creatorcontrib>DE VOS, W. M</creatorcontrib><creatorcontrib>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</creatorcontrib><creatorcontrib>NIZO, Ede, The Netherlands</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied and Environmental Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>KLIJN, N</au><au>WEERKAMP, A. H</au><au>DE VOS, W. M</au><aucorp>Firma "Viktus" OOD, Sofia (Bulgaria). Institut po Kriobiologiya i Liofilizatsiya na Selskostopanska Akademiya. S"yuz po Khranitelno-vkusova Promishlenost</aucorp><aucorp>NIZO, Ede, The Netherlands</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>1995-02-01</date><risdate>1995</risdate><volume>61</volume><issue>2</issue><spage>788</spage><epage>792</epage><pages>788-792</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>The presence of lactose-utilizing Lactococcus species in nondairy environments was studied by using identification methods based on PCR amplification and (sub)species-specific probes derived from 16S rRNA sequences. Environmental isolates from samples taken on cattle farms and in the waste flow of a cheese production plant were first identified to the genus level, using a Lactococcus genus-specific probe. Isolates which showed a positive signal with this probe were further identified to the (sub)species level. Lactococcus lactis isolates were also characterized at the phenotypic level for the ability to hydrolyze arginine, to ferment citrate, and to produce proteases and bacteriocins. With specific PCR amplifications, the presence of sequences related to citP, coding for citrate permease; prtP, coding for protease; and nisA or nisZ, the structural genes for production of nisin A or nisin Z, respectively, was verified. By these methods, it was possible to isolate lactococci from various environmental sources, such as soil, effluent water, and the skin of cattle. The strains of L. lactis isolated differed in a number of properties, such as the ability to hydrolyze arginine or the absence of citP-related sequences, from those found in industrial starter cultures. The results indicate that the majority of the industrially produced lactococci do not survive outside the dairy environment, although natural niches are available. However, from those niches strains with the potential to be developed into novel starter cultures may be isolated.</abstract><cop>Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>7574616</pmid><doi>10.1128/aem.61.2.788-792.1995</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
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identifier ISSN: 0099-2240
ispartof Applied and Environmental Microbiology, 1995-02, Vol.61 (2), p.788-792
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1098-5336
language eng
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source PubMed Central (Open Access); ASM_美国微生物学会期刊
subjects adn
agricultural soils
aguas residuales
amplification chaine polymerase
Animals
Bacteria
Bacteriology
Base Sequence
Biological and medical sciences
Biology of microorganisms of confirmed or potential industrial interest
Biotechnology
bovin laitier
Cattle
cheese
Cheese - microbiology
cheesemaking
cultivos iniciadores
culture starter
cultured milk
dairy cattle
dairy industry
Dairy products
Dairying
dechet industriel
desechos industriales
dna
DNA Primers - genetics
DNA, Bacterial - genetics
eau usee
Ecosystem
Ecosystems
ensilado
ensilage produit
enzimas
enzyme
enzymes
exploitation agricole
explotaciones agrarias
fabricacion del queso
farms
fromage
Fundamental and applied biological sciences. Psychology
ganado de leche
gene
genes
industria lechera
industrial wastes
industrie laitiere
Isolation and description
lactococcus
Lactococcus - genetics
Lactococcus - isolation & purification
Lactococcus - metabolism
Lactococcus lactis
Lactose - metabolism
lactoserum
lait
lait fermente
leche
leche fermentada
milk
Mission oriented research
Molecular Sequence Data
nisin
nisina
nysine
peau
piel animal
Polymerase Chain Reaction
proteasas
protease
proteases
queso
reaccion de cadenas de polimerasa
Ribonucleic acid
ribosomas
ribosome
ribosomes
RNA
RNA, Bacterial - genetics
RNA, Ribosomal, 16S - genetics
saliva
salive
Sequence Homology, Nucleic Acid
silage
skin
sol agricole
Species Specificity
starter cultures
suelos agricolas
suero de la leche
technologie fromagere
wastewater
whey
title Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems
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