Molecular modeling, docking and dynamics simulations of the Dioclea lasiophylla Mart. Ex Benth seed lectin: An edematogenic and hypernociceptive protein

• Published in: Biochimie 2017-04, Vol.135, p.126-136
• Main Authors: Pinto-Junior, Vanir Reis, Osterne, Vinicius Jose Silva, Santiago, Mayara Queiroz, Lossio, Claudia Figueiredo, Nagano, Celso Shiniti, Rocha, Cintia Renata Costa, Nascimento, Jessica Catarine Frutuoso, Nascimento, Francisco Lucas Faustino, Silva, Ivanice Bezerra, Oliveira, Antonia Simoni, Correia, Jorge Luis Almeida, Leal, Rodrigo Bainy, Assreuy, Ana Maria Sampaio, Cavada, Benildo Sousa, Nascimento, Kyria Santiago
• Format: Article
• Language: English
• Subjects: Dioclea - chemistry; DlyL; Hypernociceptive; Inflammatory; Lectins - chemistry; Molecular Docking Simulation; Molecular dynamics; Molecular Dynamics Simulation; Monosaccharides - chemistry; Oligosaccharides - chemistry; Structure; Tandem Mass Spectrometry
• ISSN: 0300-9084; 1638-6183
• DOI: 10.1016/j.biochi.2017.02.002

Lectins are proteins, or glycoproteins, capable of reversibly binding to specific mono- or oligosaccharides via a noncatalytic domain. The Diocleinae subtribe presents lectins with high structural similarity, but different effects based on biological activity assays. This variability results from small structural differences. Therefore, in this context, the present study aimed to perform a structural analysis of the lectin from Dioclea lasiophylla Mart. ex Benth seeds (DlyL) and evaluate its inflammatory effect. To accomplish this, DlyL was purified in a single step by affinity chromatography on Sephadex® G-50 matrix. DlyL primary structure was determined through a combination of tandem mass spectrometry and DNA sequencing. DlyL showed high similarity with other species from the same genus. Its theoretical three-dimensional structure was predicted by homology modelling, and the protein was subjected to ligand screening with monosaccharides, oligosaccharides and complex N-glycans by molecular docking. Stability and binding of the lectin with α-methyl-d-mannoside were assessed by molecular dynamics. DlyL showed acute inflammatory response with hypernociceptive effect in the paw edema model, possibly by interaction with glycans present at the cell surface. •We present the primary structure of Dioclea lasiophylla Mart Ex. Benth seed lectin (DlyL).•We obtained DlyL three-dimensional structure by homology modelling.•Molecular docking and dynamics analysis of DlyL structure was performed.•We evaluated the inflammatory and hypernociceptive effects of DlyL in rats.