Using adaptive genetic algorithms combined with high sensitivity single cell-based technology to detect bladder cancer in urine and provide a potential noninvasive marker for response to anti-PD1 immunotherapy

• Published in: Urologic oncology 2020-03, Vol.38 (3), p.77.e9-77.e15
• Main Authors: Alanee, Shaheen, Deebajah, Mustafa, Chen, Pin-I, Mora, Rodrigo, Guevara, Jose, Francisco, Brian, Patterson, Bruce K.
• Format: Article
• Language: English
• Subjects: Aged; Algorithms; Assay; Biomarkers, Tumor - urine; Bladder cancer; Diagnosis; Female; Flow Cytometry - methods; Humans; Immunotherapy; Machine learning; Male; Neoplasm Invasiveness; PD-L1 status; Programmed Cell Death 1 Receptor - antagonists & inhibitors; Sensitivity and Specificity; Single-cell; Single-Cell Analysis; Technology; Urinary Bladder Neoplasms - diagnosis; Urinary Bladder Neoplasms - drug therapy; Urinary Bladder Neoplasms - genetics; Urinary Bladder Neoplasms - urine
• ISSN: 1078-1439; 1873-2496
• DOI: 10.1016/j.urolonc.2019.08.019

•The objective of this study was to use adaptive genetic algorithms (AGA) in combination with single-cell flow cytometry technology to develop a noninvasive test to detect bladder cancer.•Fifty high grade, cystoscopy confirmed, superficial bladder cancer patients, and 15 healthy donor early morning urine samples were collected in an optimized urine collection media.•These samples were then used to develop an assay to distinguish healthy from cancer patients’ urine using AGA in combination with single-cell flow cytometry technology.•The resulting prediction model (biomarker) showed 98% sensitivity and 87% specificity with a high area under the ROC value (90%). To use adaptive genetic algorithms (AGA) in combination with single-cell flow cytometry technology to develop a noninvasive test to detect bladder cancer. Fifty high grade, cystoscopy confirmed, superficial bladder cancer patients, and 15 healthy donor early morning urine samples were collected in an optimized urine collection media. These samples were then used to develop an assay to distinguish healthy from cancer patients’ urine using AGA in combination with single-cell flow cytometry technology. Cell recovery and test performance were verified based on cystoscopy and histology for both bladder cancer determination and PD-L1 status. Bladder cancer patients had a significantly higher percentage of white blood cells with substantial PD-L1 expression (P< 0.0001), significantly increased post-G1 epithelial cells (P < 0.005) and a significantly higher DNA index above 1.05 (P < 0.05). AGA allowed parameter optimization to differentiate normal from malignant cells with high accuracy. The resulting prediction model showed 98% sensitivity and 87% specificity with a high area under the ROC value (90%). Using single-cell technology and machine learning; we developed a new assay to distinguish bladder cancer from healthy patients. Future studies are planned to validate this assay.