Meta-analysis of gene expression profiles in preeclampsia

• Published in: Pregnancy hypertension 2020-01, Vol.19, p.52-60
• Main Authors: Vennou, Konstantina E., Kontou, Panagiota I., Braliou, Georgia G., Bagos, Pantelis G.
• Format: Article
• Language: English
• Subjects: Differentially expressed genes; Female; Gene expression; Gene Expression Profiling; Humans; Meta-analysis; Microarray; Microarray Analysis; Pre-Eclampsia - genetics; Preeclampsia; Pregnancy
• ISSN: 2210-7789; 2210-7797
• DOI: 10.1016/j.preghy.2019.12.007

•We performed meta-analysis in microarray data on placental samples.•629 differentially expressed genes were associated with preeclampsia at FDR 1%.•Enriched biochemical pathways include carbohydrate, aminoacids and pyrimidine metabolism. Preeclampsia (PE) is a serious complication of pregnancy. It is considered a complex condition influenced by maternal genes, environmental factors and a deregulated immune response of the mother, but the etiology is largely unknown. The aim of this study is to identify differentially expressed genes (DEGs) in PE, to help elucidate the identification of the disease etiological mechanisms. The databases Pubmed and GEO were searched according to PRISMA guidelines for the existence of gene expression data on placental samples from case-control studies. After meta-analysis the identified DEGs were further analyzed with STRING and PANTHER to retrieve interaction networks and overrepresented biochemical pathways. Only 10 gene expression datasets and articles fulfilled inclusion criteria, containing data on 195 patients and 231 controls, and were analyzed. Meta-analysis identified 629 DEGs to be associated with PE at a False Discovery Rate p-value of 0.01. Network analysis showed few highly interconnected genes involved in innate immunity and signal transduction pathways indicative of a multifaceted disease with etiological heterogeneity. over representation analysis revealed that these genes participate mainly in carbohydrates, amino acids and pyrimidine metabolism, circadian clock system and signal transduction pathways. This work, combining rigorous methods of meta-analysis and the use of modern bioinformatics tools, proposes the existence of novel, overlooked so far, biochemical pathways and mechanisms to contribute to PE development such as carbohydrate, aminoacids and pyrimidine metabolism. Our findings pave the way for further investigation of the above pathways in experimental efforts to decipher the orchestrating mechanisms for PE development.