Caterpillar gut and host plant phylloplane mycobiomes differ: a new perspective on fungal involvement in insect guts

• Published in: FEMS microbiology ecology 2020-09, Vol.96 (9), p.1
• Main Authors: višňovská, Denisa, Pyszko, Petr, Šigut, Martin, Kostovčík, Martin, Kolařík, Miroslav, Kotásková, Nela, Drozd, Pavel
• Format: Article
• Language: English
• Subjects: Animals; Bacteria; Caterpillars; Deoxyribonucleic acid; DNA; Ecology; Environmental aspects; Fungi; Fungi - genetics; Gastrointestinal Microbiome; Host plants; Insect-plant relationships; Insecta; Insects; Intestinal microflora; Leaves; Microbial activity; Microbiology; Microbiomes; Microbiota; Microbiota (Symbiotic organisms); Microorganisms; Mycobiome - genetics; Perfect state; Phylloplane; Phyllosphere; Physiological aspects; RNA; RNA, Ribosomal, 16S - genetics; rRNA 16S; Substrates
• ISSN: 1574-6941; 0168-6496; 1574-6941
• DOI: 10.1093/femsec/fiaa116

ABSTRACT Compared with the highly diverse microbiota of leaves, herbivorous insects exhibit impoverished gut microbial communities. Research to date has focused on the bacterial component of these gut microbiomes, neglecting the fungal component. As caterpillar gut bacterial microbiomes are derived strongly from their diet, we hypothesized that their mycobiomes would reflect the host leaf mycobiomes. Using the ITS2 rDNA and V5–V6 16S rRNA gene regions for DNA metabarcoding of caterpillar gut and host leaf sample pairs we compared their mycobiome genus diversity and compositions and identified genera associated with caterpillar guts. Leaves and caterpillar guts harbored different mycobiomes with quite low qualitative similarity (Jaccard index = 38.03%). The fungal genera most significantly associated with the caterpillar gut included Penicillium, Mucor and unidentified Saccharomycetales, whereas leaf-associated genera included Holtermanniella, Gibberella (teleomorph of Fusarium) and Seimatosporium. Although caterpillar gut and leaf mycobiomes had similar genus richness overall, this indicator was not correlated for individual duplets. Moreover, as more samples entered the analysis, mycobiome richness increased more rapidly in caterpillar guts than in leaves. The results suggest that the mycobiota of the caterpillar gut differs from that of their feeding substrate; further, the mycobiomes appear to be richer than the well-studied bacterial microbiotas. DNA metabarcoding of so far neglected fungal component of lepidopteran gut microbiota revealed these mycobiomes differing from the host leaf mycobiomes, showing taxon specificity and higher turnover.