New 1,2,3‐triazole–(thio)barbituric acid hybrids as urease inhibitors: Design, synthesis, in vitro urease inhibition, docking study, and molecular dynamic simulation

• Published in: Archiv der Pharmazie (Weinheim) 2020-09, Vol.353 (9), p.e2000023-n/a
• Main Authors: Asgari, Mohammad S., Azizian, Homa, Nazari Montazer, Mohammad, Mohammadi‐Khanaposhtani, Maryam, Asadi, Mehdi, Sepehri, Saghi, Ranjbar, Parviz R., Rahimi, Rahmatollah, Biglar, Mahmood, Larijani, Bagher, Amanlou, Massoud, Mahdavi, Mohammad
• Format: Article
• Language: English
• Subjects: 1,2,3‐triazole; barbituric acid; docking study; molecular dynamic simulation; thiobarbituric acid; urease inhibition
• ISSN: 0365-6233; 1521-4184
• DOI: 10.1002/ardp.202000023

A new series of 1,2,3‐triazole–(thio)barbituric acid hybrids 8a–n was designed and synthesized on the basis of potent pharmacophores with urease inhibitory activity. Therefore, these compounds were evaluated against Helicobacter pylori urease. The obtained result demonstrated that all the synthesized compounds, 8a–n, were more potent than the standard urease inhibitor, hydroxyurea. Moreover, among them, compounds 8a, 8c–e, 8g,h, and 8k,l exhibited higher urease inhibitory activities than the other standard inhibitor used: thiourea. Docking studies were performed with the synthesized compounds. Furthermore, molecular dynamic simulation of the most potent compounds, 8e and 8l, showed that these compounds interacted with the conserved residues Cys592 and His593, which belong to the active site flap and are essential for enzymatic activity. These interactions have two consequences: (a) blocking the movement of a flap at the entrance of the active site channel and (b) stabilizing the closed active site flap conformation, which significantly reduces the catalytic activity of urease. Calculation of the physicochemical and topological properties of the synthesized compounds 8a–n predicted that all these compounds can be orally active. The ADME prediction of compounds 8a–n was also performed. The new 1,2,3‐triazole–(thio)barbituric acid hybrids 8a–n were designed on the basis of potent pharmacophores with urease inhibitory activity and evaluated against Helicobacter pylori urease. All compounds were more potent than the standard urease inhibitor, hydroxyurea. Compounds 8a, 8c–e, 8g,h, and 8k,l exhibited higher urease inhibitory activities than thiourea. Molecular dynamic simulation revealed interactions with the conserved urease residues Cys592 and His593, which belong to the active site flap and are essential for enzymatic activity.