Luteolibacter luteus sp. nov., isolated from stream bank soil

A non-motile, Gram-stain-negative, rod-shaped and yellow-colored bacterium, designated G-1-1-1 T was obtained from soil sampled at Gwanggyo stream bank, Gyeonggi-do, Republic of Korea. Cells were aerobic, catalase positive, grew optimally at 25–30 °C and hydrolysed aesculin and casein. A phylogeneti...

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Published in:Archives of microbiology 2021, Vol.203 (1), p.377-382
Main Authors: Dahal, Ram Hari, Chaudhary, Dhiraj Kumar, Kim, Dong-Uk, Kim, Jaisoo
Format: Article
Language:English
Subjects:
Amino acids
Base Composition
Biochemistry
Biomedical and Life Sciences
Biotechnology
Cardiolipin
Casein
Catalase
Cell Biology
Deoxyribonucleic acid
Diagnostic systems
Diaminopimelic Acid - chemistry
DNA
DNA, Bacterial - genetics
Ecology
Esculin
Fatty acids
Fatty Acids - chemistry
Gene clusters
Genomes
Gram stain
Life Sciences
Lipids
Menaquinones
Metabolites
Microbial Ecology
Microbiology
New species
Original Paper
Peptidoglycans
Phosphatidylethanolamine
Phosphatidylglycerol
Phospholipids
Phospholipids - chemistry
Phylogenetics
Phylogeny
Quinones
Republic of Korea
Rivers
RNA, Ribosomal, 16S - genetics
rRNA 16S
Secondary metabolites
Soil Microbiology
Soils
Species Specificity
Stream banks
Verrucomicrobia - classification
Verrucomicrobia - genetics
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description A non-motile, Gram-stain-negative, rod-shaped and yellow-colored bacterium, designated G-1-1-1 T was obtained from soil sampled at Gwanggyo stream bank, Gyeonggi-do, Republic of Korea. Cells were aerobic, catalase positive, grew optimally at 25–30 °C and hydrolysed aesculin and casein. A phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain G-1-1-1 T formed a lineage within the genus Luteolibacter . The closest members were Luteolibacter flavescens GKX T (97.7% sequence similarity) and Luteolibacter arcticus MC 3726 T (97.3%). The sequence similarities with other members of the genus Luteolibacter were ≤ 93.9%. The genome of strain G-1-1-1 T was 6,412,079 bp long with 5176 protein-coding genes. The diagnostic amino acid of cell-wall peptidoglycan of strain G-1-1-1 T was meso -diaminopimelic acid. The only respiratory quinone was menaquinone-9 and the principal polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and unidentified phospholipids. The predominant cellular fatty acids were iso-C 14:0 , C 16:1 ω 9 c , C 16:0 , C 14:0 and anteiso-C 15:0 . The DNA G + C content was 61.0 mol%. The anti-SMASH analysis of whole genome showed eight putative biosynthetic gene clusters responsible for various secondary metabolites. Based on genomic, chemotaxonomic, phenotypic and phylogenetic analyses, strain G-1-1-1 T represents a novel species in the genus Luteobacter , for which the name Luteolibacter luteus sp. nov. is proposed. The type strain is G-1-1-1 T (= KACC 21614 T  = NBRC 114341 T ).
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Cells were aerobic, catalase positive, grew optimally at 25–30 °C and hydrolysed aesculin and casein. A phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain G-1-1-1 T formed a lineage within the genus Luteolibacter . The closest members were Luteolibacter flavescens GKX T (97.7% sequence similarity) and Luteolibacter arcticus MC 3726 T (97.3%). The sequence similarities with other members of the genus Luteolibacter were ≤ 93.9%. The genome of strain G-1-1-1 T was 6,412,079 bp long with 5176 protein-coding genes. The diagnostic amino acid of cell-wall peptidoglycan of strain G-1-1-1 T was meso -diaminopimelic acid. The only respiratory quinone was menaquinone-9 and the principal polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and unidentified phospholipids. The predominant cellular fatty acids were iso-C 14:0 , C 16:1 ω 9 c , C 16:0 , C 14:0 and anteiso-C 15:0 . The DNA G + C content was 61.0 mol%. The anti-SMASH analysis of whole genome showed eight putative biosynthetic gene clusters responsible for various secondary metabolites. Based on genomic, chemotaxonomic, phenotypic and phylogenetic analyses, strain G-1-1-1 T represents a novel species in the genus Luteobacter , for which the name Luteolibacter luteus sp. nov. is proposed. 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Cells were aerobic, catalase positive, grew optimally at 25–30 °C and hydrolysed aesculin and casein. A phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain G-1-1-1 T formed a lineage within the genus Luteolibacter . The closest members were Luteolibacter flavescens GKX T (97.7% sequence similarity) and Luteolibacter arcticus MC 3726 T (97.3%). The sequence similarities with other members of the genus Luteolibacter were ≤ 93.9%. The genome of strain G-1-1-1 T was 6,412,079 bp long with 5176 protein-coding genes. The diagnostic amino acid of cell-wall peptidoglycan of strain G-1-1-1 T was meso -diaminopimelic acid. The only respiratory quinone was menaquinone-9 and the principal polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and unidentified phospholipids. The predominant cellular fatty acids were iso-C 14:0 , C 16:1 ω 9 c , C 16:0 , C 14:0 and anteiso-C 15:0 . The DNA G + C content was 61.0 mol%. The anti-SMASH analysis of whole genome showed eight putative biosynthetic gene clusters responsible for various secondary metabolites. Based on genomic, chemotaxonomic, phenotypic and phylogenetic analyses, strain G-1-1-1 T represents a novel species in the genus Luteobacter , for which the name Luteolibacter luteus sp. nov. is proposed. The type strain is G-1-1-1 T (= KACC 21614 T  = NBRC 114341 T ).</description><subject>Amino acids</subject><subject>Base Composition</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cardiolipin</subject><subject>Casein</subject><subject>Catalase</subject><subject>Cell Biology</subject><subject>Deoxyribonucleic acid</subject><subject>Diagnostic systems</subject><subject>Diaminopimelic Acid - chemistry</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Ecology</subject><subject>Esculin</subject><subject>Fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>Gene clusters</subject><subject>Genomes</subject><subject>Gram stain</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Menaquinones</subject><subject>Metabolites</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Original Paper</subject><subject>Peptidoglycans</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phospholipids</subject><subject>Phospholipids - chemistry</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Quinones</subject><subject>Republic of Korea</subject><subject>Rivers</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Secondary metabolites</subject><subject>Soil Microbiology</subject><subject>Soils</subject><subject>Species Specificity</subject><subject>Stream banks</subject><subject>Verrucomicrobia - classification</subject><subject>Verrucomicrobia - genetics</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LAzEQhoMotlb_gAcJePHg1nxtNjl4kOIXFLwoeAvZJJWtu5ua7Er996ZuVfDgYWYY5pl3hheAY4ymGKHiIiJEEM1S2gQT2XoHjDGjJEMFed4FY0QRyYSkdAQOYlwihIkQYh-MKJGckTwfg8t53zlfV6U2nQuwTl0fYVxNYevfp-ewir7WnbNwEXwDYxecbmCp21cYfVUfgr2FrqM72tYJeLq5fpzdZfOH2_vZ1TwzRKJ1ZnOusZAYO2m4QMhYTmlZYitzJiwrS2oJJZhoJhHnRU65JrZgEhuzkIRJOgFng-4q-LfexU41VTSurnXrfB8VYSxnhOZCJPT0D7r0fWjTd4kqBOdU0o0gGSgTfIzBLdQqVI0OHwojtTFXDeaqlNSXuWqdlk620n3ZOPuz8u1mAugAxDRqX1z4vf2P7Cc9G4KM</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Dahal, Ram Hari</creator><creator>Chaudhary, Dhiraj Kumar</creator><creator>Kim, Dong-Uk</creator><creator>Kim, Jaisoo</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-3876-3922</orcidid></search><sort><creationdate>2021</creationdate><title>Luteolibacter luteus sp. nov., isolated from stream bank soil</title><author>Dahal, Ram Hari ; 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subjects Amino acids
Base Composition
Biochemistry
Biomedical and Life Sciences
Biotechnology
Cardiolipin
Casein
Catalase
Cell Biology
Deoxyribonucleic acid
Diagnostic systems
Diaminopimelic Acid - chemistry
DNA
DNA, Bacterial - genetics
Ecology
Esculin
Fatty acids
Fatty Acids - chemistry
Gene clusters
Genomes
Gram stain
Life Sciences
Lipids
Menaquinones
Metabolites
Microbial Ecology
Microbiology
New species
Original Paper
Peptidoglycans
Phosphatidylethanolamine
Phosphatidylglycerol
Phospholipids
Phospholipids - chemistry
Phylogenetics
Phylogeny
Quinones
Republic of Korea
Rivers
RNA, Ribosomal, 16S - genetics
rRNA 16S
Secondary metabolites
Soil Microbiology
Soils
Species Specificity
Stream banks
Verrucomicrobia - classification
Verrucomicrobia - genetics
title Luteolibacter luteus sp. nov., isolated from stream bank soil
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