A Protein Data Bank survey of multimodal binding of thiocyanate to proteins: Evidence for thiocyanate promiscuity

• Published in: International journal of biological macromolecules 2022-05, Vol.208, p.29-36
• Main Authors: Paladino, Antonella, Balasco, Nicole, Graziano, Giuseppe, Vitagliano, Luigi
• Format: Article
• Language: English
• Subjects: Hofmeister salts; Molecular interactions; Protein solubility; Protein stability; Thiocyanate; Thiocyanate-protein interactions
• ISSN: 0141-8130; 1879-0003
• DOI: 10.1016/j.ijbiomac.2022.03.012

Over the last one and half century, a myriad of studies has demonstrated that Hofmeister ions have a major impact on protein stability and solubility. Nevertheless, the definition of the physico-chemical basis of their activity has proved to be highly challenging and controversial. Here, by exploiting the enormous information content of the Protein Data Bank, we explored the binding to proteins of thiocyanate, the anion of the series exerting the highest solubilization/destabilization effects. The survey, which led to the identification and characterization of 712 thiocyanate binding sites, provides a comprehensive and atomic-level view of the varied interactions that the ion forms with proteins. The inspection of these sites highlights a limited tendency of thiocyanate to interact with structured water molecules, in line with the reported poor hydration of the ion. On the other hand, the thiocyanate makes interactions with protein nonpolar moieties, especially with the backbone Cα atom. In as many as 104 cases, the ion exclusively makes nonpolar contacts. In conclusion, these findings suggest that the ability of thiocyanate to bind all types of protein exposed patches may lead to the formation of a negatively charged electrostatic barrier that could prevent protein-protein aggregation and promote protein solubility. Moreover, the denaturing action of thiocyanate may be ascribed to its ability to establish multiple attractive interactions with protein surfaces. •We detected 712 independent thiocyanate binding sites in protein structures.•Thiocyanate presents an unexpected propensity to interact with apolar atoms.•The negatively charged layer made by the ion may promote protein solubility.•The promiscuous nature of the thiocyanate explains its remarkable denaturing effects.