Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis

• Published in: The Protein Journal 2022-06, Vol.41 (3), p.424-433
• Main Authors: Pandey, Manitosh, Tiwari, Satish, Johri, Sonia, Biswal, Bichitra K, Sharma, Chandresh, Pandey, Amit Kumar
• Format: Article
• Language: English
• Subjects: Affinity chromatography; Animal Anatomy; Binding sites; Biochemistry; Bioorganic Chemistry; Blood proteins; Chemistry; Chemistry and Materials Science; Deoxyribonucleic acid; DNA; DNA binding proteins; DNA sequencing; E coli; Electrophoretic mobility; Gene expression; Genes; Genetic aspects; Genetic engineering; Genetic transcription; Histology; Investigations; Morphology; Mycobacterium tuberculosis; Nucleotide sequence; Nucleotide sequencing; Optimization; Organic Chemistry; Protein binding; Protein purification; Proteins; Purification; Recombinant proteins; Regulatory sequences; Signal transduction; Signaling; Transcription factors; Tuberculosis
• ISSN: 1572-3887; 1875-8355; 1573-4943
• DOI: 10.1007/s10930-022-10062-9

Mycobacterium tuberculosis , the causative agent of tuberculosis, demonstrates immense plasticity with which it adapts to a highly dynamic and hostile host environment. This is facilitated by a web of signalling pathways constantly modulated by a multitude of proteins that regulate the flow of genetic information inside the pathogen. Transcription factors (TFs) belongs to one such family of proteins that modulate the signalling by regulating the abundance of proteins at the transcript level. In the current study, we have characterized the putative transcriptional regulatory protein encoded by the Rv1719 gene of Mycobacterium tuberculosis . This TF belongs to the IclR family of proteins with orthologs found in both bacterial and archaeal species. We cloned the Rv1719 gene into the pET28a expression vector and performed heterologous expression of the recombinant protein with E coli as the host. Further, optimization of the purification protocol by affinity chromatography and characterization of proteins for their functional viability has been demonstrated using various biochemical and/or biophysical approaches. Scale-up of purification yielded approximately 30 mg of ~ 28 kDa protein per litre of culture. In-silico protein domain analysis of Rv1719 protein predicted the presence of the helix-turn-helix (HTH) domain suggesting its ability to bind DNA sequence and modulate transcription; a hallmark of a transcriptional regulatory protein. Further, by performing electrophoretic mobility shift assay (EMSA) we demonstrated that the protein binds to a specific DNA fragment harboring the probable binding site of one of the predicted promoters.