Lysine Acetylation Changes the Mechanism of Aβ25–35 Peptide Binding and Dimerization in the DMPC Bilayer

• Published in: ACS chemical neuroscience 2023-02, Vol.14 (3), p.494-505
• Main Authors: Khayat, Elias, Delfing, Bryan M., Laracuente, Xavier, Olson, Audrey, Lockhart, Christopher, Klimov, Dmitri K.
• Format: Article
• Language: English
• Subjects: Acetylation; Amyloid beta-Peptides - metabolism; Dimerization; Dimyristoylphosphatidylcholine - chemistry; Dimyristoylphosphatidylcholine - metabolism; Lipid Bilayers - metabolism; Lysine - metabolism; Molecular Dynamics Simulation; Peptide Fragments - metabolism; Protein Processing, Post-Translational
• ISSN: 1948-7193; 1948-7193
• DOI: 10.1021/acschemneuro.2c00722

The impact of Lys28 acetylation on Alzheimer’s Aβ peptide binding to the lipid bilayer has not been previously studied, either experimentally or computationally. To probe this common post-translational modification, we performed all-atom replica exchange molecular dynamics simulations targeting binding and aggregation of acetylated acAβ25–35 peptide within the DMPC bilayer. Using the unmodified Aβ25–35 studied previously as a reference, our results can be summarized as follows. First, Lys28 acetylation strengthens the Aβ25–35 hydrophobic moment and consequently promotes the helical structure across the peptide extending it into the N-terminus. Second, because Lys28 acetylation disrupts electrostatic contact between Lys28 and lipid phosphate groups, it reduces the binding affinity of acAβ25–35 peptides to the DMPC bilayer. Accordingly, although acetylation preserves the bimodal binding featuring a preferred inserted state and a less probable surface bound state, it decreases the stability of the former. Third, acetylation promotes acAβ25–35 aggregation and eliminates monomers as thermodynamically viable species. More importantly, acAβ25–35 retains as the most thermodynamically stable the inserted dimer with unique head-to-tail helical aggregation interface. However, due to enhanced helix structure, this dimer state becomes less stable and is less likely to propagate into higher order aggregates. Thus, acetylation is predicted to facilitate the formation of low-molecular-weight oligomers. Other post-translational modifications, including phosphorylation and oxidation, reduce helical propensity and have divergent impact on aggregation. Consequently, acetylation, when considered in its totality, has distinct consequences on Aβ25–35 binding and aggregation in the lipid bilayer.