Molecular characterization of horse nettle virus A, a new member of subgroup B of the genus Nepovirus

A new positive-strand RNA virus was discovered in a horse nettle plant, using high-throughput sequencing (HTS), and its complete genome, consisting of RNA1 and RNA2, which are 7522 and 4710 nucleotides in length, respectively, was characterized. Each genome segment contains a single open reading fra...

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Published in:Archives of virology 2023-03, Vol.168 (3), p.86-86, Article 86
Main Authors: Zhou, Jing, Hu, Xiaojun, Vieira, Paulo, Atha, Benjamin, McFarland, Clint, Foster, Joseph A., Hurtado-Gonzales, Oscar P.
Format: Article
Language:English
Subjects:
3' Untranslated regions
Amino Acid Sequence
Amino acids
Annotated Sequence Record
Biomedical and Life Sciences
Biomedicine
Genome, Viral
Genomes
Infectious Diseases
Laboratories
Medical Microbiology
Nepovirus
Nepovirus - genetics
New species
Next-generation sequencing
Nucleotides
Phylogenetics
Phylogeny
Polyadenylation
Proteins
Recombination
RNA viruses
RNA, Viral - chemistry
RNA, Viral - genetics
Solanum
Virology
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container_title Archives of virology
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creator Zhou, Jing
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Hurtado-Gonzales, Oscar P.
description A new positive-strand RNA virus was discovered in a horse nettle plant, using high-throughput sequencing (HTS), and its complete genome, consisting of RNA1 and RNA2, which are 7522 and 4710 nucleotides in length, respectively, was characterized. Each genome segment contains a single open reading frame flanked by 5′ and 3′ untranslated regions (UTRs), followed by a poly(A) tail at the 3′ end. The encoded proteins have the highest amino acid sequence identity (55% and 45%) to the polyprotein encoded by RNA1 of tomato black ring virus (TBRV) and RNA2 of potato virus B (PVB), respectively. Its genome organization and phylogenetic relationship to other nepoviruses suggested that this virus is a novel member of subgroup B, and recombination analysis revealed its evolutionary history within the subgroup. These results suggest the new virus, provisionally named "horse nettle virus A", represents a new species within the genus Nepovirus.
doi_str_mv 10.1007/s00705-023-05708-7
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ispartof Archives of virology, 2023-03, Vol.168 (3), p.86-86, Article 86
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1432-8798
language eng
recordid cdi_proquest_miscellaneous_2775620771
source Springer Nature
subjects 3' Untranslated regions
Amino Acid Sequence
Amino acids
Annotated Sequence Record
Biomedical and Life Sciences
Biomedicine
Genome, Viral
Genomes
Infectious Diseases
Laboratories
Medical Microbiology
Nepovirus
Nepovirus - genetics
New species
Next-generation sequencing
Nucleotides
Phylogenetics
Phylogeny
Polyadenylation
Proteins
Recombination
RNA viruses
RNA, Viral - chemistry
RNA, Viral - genetics
Solanum
Virology
title Molecular characterization of horse nettle virus A, a new member of subgroup B of the genus Nepovirus
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