CHARMM-GUI PDB Manipulator: Various PDB Structural Modifications for Biomolecular Modeling and Simulation

[Display omitted] •PDB Manipulator can detect and model many nonstandard amino acids and nucleic acids.•PDB Manipulator can detect and model ubiquitin/SUMO chains for a protein structure.•Various PTM modifications of Lys and Arg are supported in PDB Manipulator.•Users can edit the ligand structure f...

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Bibliographic Details
Published in:Journal of molecular biology 2023-07, Vol.435 (14), p.167995-167995, Article 167995
Main Authors: Park, Sang-Jun, Kern, Nathan, Brown, Turner, Lee, Jumin, Im, Wonpil
Format: Article
Language:English
Subjects:
all-atom modeling
biomedical research
Computer Simulation
Internet
Models, Molecular
molecular biology
molecular dynamics
Molecular Dynamics Simulation
nonstandard amino acid/RNA
peptides
post translational modifications
RNA
Software
sumoylation
ubiquitylation/SUMOylation
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