Gold nanoparticle assisted colorimetric biosensors for rapid polyethylene terephthalate (PET) sensing for sustainable environment to monitor microplastics

• Published in: Environmental research 2023-10, Vol.234, p.116556-116556, Article 116556
• Main Authors: Behera, Abhishek, Mahapatra, Soumya Ranjan, Majhi, Sanatan, Misra, Namrata, Sharma, Rohit, Singh, Jay, Singh, Ravindra Pratap, Pandey, Shyam S., Singh, Kshitij RB, Kerry, Rout George
• Format: Article
• Language: English
• Subjects: Detection; MD simulation; Microplastic; Molecular docking; Pollutants; Polyethylene terephthalate
• ISSN: 0013-9351; 1096-0953
• DOI: 10.1016/j.envres.2023.116556

The extremely widespread and ubiquitous nature of plastics, estimated to boost its global production by 26 billion tons till 2050. The large chunks of plastic waste that decomposed down to micro- or nano plastics (MNPs) leads to various ill effects on biological entities. The conventional PET detection methods lack rapid detection of microplastics due to variances in microplastic features, long-drawn-out sample pre-processing procedures and complex instrumentation. Therefore, an instantaneous colorimetric evaluation of microplastic will ensures the simplicity of conducting assays on field. Several nanoparticle-based biosensors that detects proteins, nucleic acids, metabolites operate on either cluster or disperse state of nanoparticle. However, gold nanoparticle (AuNPs) emerges an ideal scaffold for sensory element in lateral flow biosensors due to their simple surface functionalization, unique optoelectronic properties and varied colour spectrum depending on morphologies and aggregation state. In this paper an effort has been made in the form of a hypothesis using in silico tools as a basis to detect polyethylene terephthalate (PET) – most abundant type of microplastic using gold nanoparticle based lateral flow biosensor. We retrieved sequences of PET-binding synthetic peptides and modelled their 3-D structure using I-Tasser server. The best protein model for each peptide sequences are docked with PET monomers – BHET, MHET and other PET polymeric ligands, to evaluate their binding affinities. The synthetic peptide SP 1 (WPAWKTHPILRM) docked with BHET and (MHET)4 exhibits 1.5-fold increases in binding affinity as compared to reference PET anchor peptide Dermaseptin SI (DSI). The GROMACS molecular dynamics simulation studies of synthetic peptide SP 1 - BHET & - (MHET)4 complexes for 50 ns further confirmed the stable binding. RMSF, RMSD, hydrogen bonds, Rg and SASA analysis provides useful structural insights of the SP 1 complexes as compared to reference DSI. Furthermore, SP 1 functionalized AuNP-based colorimetric device was described in detail for detection of PET. •AutoDock Vina for screening out novel PET binding anchor peptides.•Molecular Dynamics simulation illustrates PET - SP 1 structural stability.•Synthetic peptide functionalized AuNPs based colorimetric PET biosensor.