In silico investigation of potential phytoconstituents against ligand- and voltage-gated ion channels as antiepileptic agents

• Published in: 3 Biotech 2024-04, Vol.14 (4), p.99-99, Article 99
• Main Authors: Salaria, Punam, Subrahmanyeswara Rao, N. N., Dhameliya, Tejas M., Amarendar Reddy, M.
• Format: Article
• Language: English
• Subjects: Agriculture; Anticonvulsants; Antiepileptic agents; Binding sites; Bioinformatics; Biomaterials; Biotechnology; Blood-brain barrier; Calcium channels (voltage-gated); Cancer Research; Carbonic anhydrase; Carbonic anhydrase II; Channel gating; Chemistry; Chemistry and Materials Science; Conformation; Epigallocatechin gallate; Epilepsy; Free energy; Glutamic acid receptors; Ion channels; Ligands; Membrane permeability; Molecular docking; Molecular dynamics; N-Methyl-D-aspartic acid; Original Article; Pharmacokinetics; Phenytoin; Phytochemicals; Principal components analysis; Propionic acid; Proteins; Receptors; Sodium channels; Sodium channels (voltage-gated); Stem Cells; α-Amino-3-hydroxy-5-methyl-4-isoxazole propionic acid
• ISSN: 2190-572X; 2190-5738
• DOI: 10.1007/s13205-024-03948-1

The most promising anticonvulsant phytocompounds were explored in this work using docking, molecular dynamic (MD) simulation, and Molecular Mechanics-Poisson–Boltzmann Surface Area (MM-PBSA) approaches. A total of 70 phytochemicals were screened against α-amino-3-hydroxyl-5-methyl-4-isoxazole propionic acid (AMPA), N -methyl- d -aspartate (NMDA), voltage-gated sodium ion channels (VGSC), and carbonic anhydrase enzyme II (CA II) receptors, and the docking results were compared to the reference drug phenytoin. Amentoflavone displayed the highest affinity for AMPA and VGSC receptors, with docking scores of − 10.4 and − 10.1 kcal/mol, respectively. Oliganthin H-NMDA and epigallocatechin-3-gallate-CA II complexes showed docking scores of − 10.9 and − 6.9 kcal/mol, respectively. All four complexes depicted a high dock score compared to the phenytoin complex at the binding site of the corresponding proteins. The MD simulation investigated the stabilities and favorable conformation of apoproteins and ligand/reference-bound complexes. The results revealed that proteins AMPA, VGSC, and CA II were more efficiently stabilized by lead phytochemicals than phenytoin binding. Additionally, principal component analysis and MM-PBSA results suggested that these lead phytocompounds have good compactness and strong binding free energy. Further, physicochemical and pharmacokinetic studies revealed that these final lead phytochemicals would be suitable for oral intake, have sufficient intestinal permeability, and have the ability to cross the blood–brain barrier (BBB). Comprehensively, this study predicted amentoflavone as the best lead phytochemical out of the 70 anticonvulsant phytocompounds that can be used to treat epilepsy.