Expanding DNA Origami Design Freedom with De Novo Synthesized Scaffolds

• Published in: Journal of the American Chemical Society 2024-06, Vol.146 (23), p.16076-16084
• Main Authors: Wu, Hongrui, Zhang, Tianqing, Qin, Yan, Xia, Xinwei, Bai, Tanxi, Gu, Hongzhou, Wei, Bryan
• Format: Article
• Language: English
• Subjects: ambient temperature; bacteriophages; DNA - chemistry; DNA, Single-Stranded - chemistry; genome; nanomaterials; Nanostructures - chemistry; Nanotechnology - methods; Nucleic Acid Conformation; single-stranded DNA
• ISSN: 0002-7863; 1520-5126; 1520-5126
• DOI: 10.1021/jacs.4c03148

The construction of DNA origami nanostructures is heavily dependent on the folding of the scaffold strand, which is typically a single-stranded DNA genome extracted from a bacteriophage (M13). Custom scaffolds can be prepared in a number of methods, but they are not widely accessible to a broad user base in the DNA nanotechnology community. Here, we explored new design and construction possibilities with custom scaffolds prepared in our cost- and time-efficient production pipeline. According to the pipeline, we de novo produced a variety of scaffolds of specified local and global sequence characteristics and consequent origami constructs of modular arrangement in morphologies and functionalities. Taking advantage of this strategy of template-free scaffold production, we also designed and produced three-letter-coded scaffolds that can fold into designated morphologies rapidly at room temperature. The expanded design and construction freedom immediately brings in many new research opportunities and invites many more on the horizon.