Binding of histone H1 to DNA is described by an allosteric model

• Published in: Biopolymers 2005-01, Vol.77 (1), p.9-17
• Main Authors: Mamoon, Naila M., Song, Yuguang, Wellman, Susan E.
• Format: Article
• Language: English
• Subjects: allosteric model; Allosteric Site; Bacteriophage T4; DNA, Viral - chemistry; DNA, Viral - metabolism; Escherichia coli - genetics; H1 histone; histone-DNA binding affinity; Histones - chemistry; Histones - metabolism; Kinetics; linker histone; Models, Chemical; neighbor exclusion model; Phage T4; Protein Binding; Recombinant Proteins - chemistry; Recombinant Proteins - metabolism
• ISSN: 0006-3525; 1097-0282
• DOI: 10.1002/bip.20172

Equilibrium binding data were analyzed to characterize the interaction of the linker histone H1° with unmodified T4 phage DNA. Data were cast into the Scatchard‐type plot described by McGhee and von Hippel and fit to their eponymous model for nonspecific binding of ligand to DNA. The data were not fit by the simple McGhee–von Hippel model, nor fit satisfactorily by the inclusion of a cooperativity parameter. Instead, the interaction appeared to be well described by Crothers' allosteric model, in which the higher affinity of the protein for one conformational form of the DNA drives an allosteric transition of the DNA to the conformational form with higher affinity (form 2). At 214 mM Na+, the observed affinity K for an isolated site on unmodified T4 bacteriophage DNA in the form 2 conformation is 4.5 × 107 M−1. The binding constant for an isolated site on DNA in the conformation with lower affinity, form 1, appears to be about 10‐fold lower. Binding affinity is dependent on ion concentration: the magnitude of K is about 10‐fold higher at 14 mM (5.9 × 108 M−1 for form 2 DNA) than at 214 mM Na+ concentration. © 2004 Wiley Periodicals, Inc. Biopolymers, 2005